Gene detail

Detailed information of OS493_010327-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_010327-T1	ZINC FINGER PROTEIN ZIC AND GLI	scaffold_25	1073514	1082536	+

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_010327-T1

ATGAACTGCATAACTCGGAGAGGTCGTGGTATTCTGGTGGCGTTCGAAGGTTGTGATCGAAGCGGGAAATCAACACAATGTCAAATGCTTGTAGAATATTTGAAATCGATTGGACGAGATGTAGCTCTTTTACGATTTCCAGACAGAACAACAGCCATTGGACAGTCCATCAATTCATATCTACAGGGCACAACTGAGTTAGAAGATCATGTGATTCATTTACTGTTTTCTGCAAACAGATGGGAGGCTGTACCCAAAATAAAGCAGCTTTTAGACAATGGAACTCTTGTGATAGGTTTTGATGTGACATGGTGTAAGAATCCTGATCGGGGTTTGCCAAATCCTGATGTGGTTTTTTATTTAGACATCTCAACCAAAGATGCCGTGACAAGGGGCTCCTACGGCGAGGAAAGGTACGAGATGGTTGAATTCCAAGAACGAGTCGCAGAGATCTATAAACAACTCAAGAGTGATGACTGGAAGGTTGTAGATGCTATGAAAAATATCAATGAAATTCACACGGAGATCCGAGACACTGTTCTCGAATTGGAAGCGCTGTCAATCGATACAATCGCCAGCCAATGGCAGATAAACATCAATTTACCCCCAATGGGCTTCTTGTGTGTTGCAAGCAGTTTTCATTGCAAGGTCGGAAGAAGTCAACAGTGTCTTAGCAGTGAGCAGATTTGCAACTCTTGTTTCTTCACGCGTTTTGATCACGCGGAACCAAAAATGGAGGCTGGTCCTCTAACGCGAAATTACCCGAACATTTTCGAGTGTTTGACGAGCCACAATCCATCCATGCCGGCTTTTGGCCTACAGAGACCCGTGATGCCCGATAACGTTGAGTTGACTCCAGATGCTACCCACGGATATTCACCATACGCCGAGTCTCCCATGCATTTGCCCGGTTTGAGGACGGGCGCTCACGATTTTATCCACACACTATCAGGGGGTAGTGCTCAAGGGGCGTTTAACCTGCAGGCCAATTATCCAGTCCCAGCTGCGTATTCTTCACTGGCTGCCCGTGGAAGAGAGTTCCTGCTACGCCGTGAACATGTAACGCTGCCTTCTGTATCGTTACCGACTCACACCATCTCCGTGGACGTGACAGCTTCGTCGGCGAATCTTGTTGTTCCACCACCGCCCCCTTCTGCGTTTCAACAAACGATCTTCACGACGAGCAACGTAGCTCTCCATGCCATCAACATTCCAAGTTTCGCCAACGGTCCTGCTCCGCTGCCGTCCCAAGCGCTCGGACAAGACGCGCATCACGCCGCCTCCTACTCTAACGTTGGTCTTTCGAACCACGTTCAAGCGTCACCGACATCAGAAGCCAGCAACAGCAGTAGCGATTCACAAACGGAGTCCTCTCGCGTATCGGTGAATATTGGCGATGCCCAAGGAAGCATTGTGTTGCCTCATCCAAGCCCGCTCAATGCAGTGAAAGCCGGCTTCGTGCCCTCGCCCACAAGCGTTGTGCCGTCCATGGAATTGTCATCCAATGGTGCGTTTCTCCGCTACATAAGACCACAAGGCAAGCTAGAATTCGTGTGCAGATGGGCGCTTCTACGCAACAAAATATCCATCCCTTGCGATAAAAATTACCCAACCATTCAGGAGTTGGTGAAGCATCTTTCTTTGGAGCATGTGGGAGGAAGCGATGGCAATTCTTCACACGTCTGTTTGTGGCATGAGTGTCACAGAGGAGGCAAACCATTCAAAGCCAAGTACAAGCTTATCAACCACATTCGTGTTCACACTGGAGAGAAGCCCTTCTCGTGCCCCTTTGCCAACTGCGGGAAAACCTTCGCGCGCTCGGAAAATCTCAAGATTCACAAGCGCACGCACACGGGAGAAAAGCCATTCGTGTGTGAATTTCCTGGCTGTAATCGTCGTTTCGCCAACTCGAGCGATCGTAAGAAGCACTCCCATGTCCACACCGCGGATAAACCGTACCTCTGTAGAGTGCCAAGCTGTGGCAAGAGCTACACACATCCAAGCTCTCTAAGGAAGCATTTAAAGATGCATTTGAAGGCCGCAAACGGAAGTCTGGCTTTGGACAGTAACGAGAGCATGGCGTTGATGTCGCAGGCGGAATTACAACTGAACAGTTCTAATGTTCAGTCTAGAAATATGCAGCCGTGGTTTGCTTTCGCTCAACAACCACCGAAAAGTGGCATTTCATTGAATGCGCAAGCAGTGAAAGAAGAAACAGCGAACTAA

Transcript

OS493_010327-T1

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	zf-C2H2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan
PF02223	Thymidylate_kin	Thymidylate kinase	Domain	Interproscan
PF18366	zf_ZIC	Zic proteins zinc finger domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR018094	Family	Thymidylate kinase	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR039430	Domain	Thymidylate kinase-like domain	Interproscan
IPR041643	Domain	ZIC protein, zinc finger domain	Interproscan
IPR050329	Family	GLI C2H2-type zinc-finger	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19818	ZINC FINGER PROTEIN ZIC AND GLI	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000122	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0004798	Molecular Function	thymidylate kinase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006233	Biological Process	dTDP biosynthetic process	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_010327-T1 global RNA-seq network