Gene detail

Detailed information of OS493_010274-T1 in Lophelia pertusa

Genomic Location: scaffold_25:590687...608707
NR annotation: KAJ7392623.1, Cullin-3 [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

OS493_010274-T1

ATGAGTCTGCGATCTGGGAAGAAAGACACTAAGATGAGGATTCGGGCTTTTCCGATGACTATGGATGACAAGTATGTTGAAGATATCTGGAATTTACTGAAGAATGCAATACAGGAGATTCAGAAAAAGAACAATAGCGGCCTGAGTTTTGAAGAATTGTATAGGAATGCTTATACTATGGTATTACACAAGCATGGGGAGAGGTTATACTCTGGACTCAAGCAAGTTGTTACAGAACATTTGGTAGAAAAGATACGTAAAGATGTAGTGGTTTCACTCAATAACAATTTCCTGGACACATTGAATGCTGCCTGGAATGATCATCAAACGTCAATGGTGATGATTAGAGATATTCTCATGTACATGGATAGAGTATACGTTCAACAAAATGGTGTTGATAATGTCTACAACTTAGGATTAATCCTTTTCAGGGACTTGGTGGTGAGGTACGGTAATATAAGAGATCATCTGTGTCAAACATTGCTTACACTGGTCAGAAGGGAACGGAAGGGAGAAGTCGTTGACAGGATGGCCATTAGAAATGCTTGTCAGATGTTGATGATATTGGGTATAGACACAAGAAGTGTTTATGAAGAGGACTTTGAGAGGCCCTTCCTTGAAGAGTCGGCAGAATTCTACAAATTAGAAGGTCAAAAGTTCCTTGCAGAAAACAGTGCATCAGTATATATTCAGAAGGTTGAAGCCAGAATTAATGAAGAATCAGAACGGGCCAAGCATTATTTGGATCCCACTACTGAGGATCCTATTGTTAAGCCATGCCAAAGAATATGTTTGAATTGCTTAGTTGAAAAAAGAAGAATTTTCCATACAGGTTGTGGAAGAGGAGTTAATACGGAAGCACATGAAGACGGTGGTCGAAATGGAGAACTCTGGTGTTATTCATATGCTCAAACACAACAAATAGAAGATCTGGCAAGAATGTACCGTCTATTTGTCAGAGTAAAGGATGGGTTAAAGACGGTGTGCGACTGCATGAAAGGATACCTGCGTGAACAAGGGAAAGCTCTTGTTGTAGAGGAAGAAGGGGAAAGTGGTAAAAATCCCATCACCTACATTCAGAGTCTTCTAAACTTAAAGGACAGATTTGATCATTTCTTGAACAATTCCTTCAATAATGACAGATTATTCAAGCAGGCAATATCTTCAGAATTTGAACATTTTCTCAATCTCAATGGAAAATCACCTGAATTTTTGTCCCTTTTCATTGATGACAAACTCAAGAAAGGAGTAAAGGGGCTTTCTGAACAAGAAGTAGAAATCGTATTGGATAAATGTATGGTGCTATTCAGATTTCTTCAAGAAAAGGATGTATTTGAACGGTATTACAAACAGCATCTAGCCAAAAGACTTCTTCTAGGAAAGAGCATCTCAGATGACTCGGAGAAAAATATGATCTCCAAGCTGAAGGAGGGTGGTCCCACAGAAACACGTCGCCACATATTCCAAGTATCCTCGTACCAGATGTGTCTGTTAATGCTGTTTAACACTCAAGAGAGATGGACACATGAGGAGATTAGTCAGCATACAGAAATTCCCGAAAGAGATTTAAACCGAGCGTTGCAATCACTAGCGTGTGGAAAAGCAACACAAAGAGTTCTTACTAAAGATCCAAAGGGAAAAGATATATTGACGACAGATGTGTTTTCACTGAACGAACAGTTCACGTCCAAATTACACAGAGTCAAAATACAAACAGTTCTAGCTAAAGGTGAATTGGAACCCGAGAGAAAGGAGACCAGAAGTAAAGTCGACGAAGATAGAAAACACGAAATCGAAGCTGCGATTGTAAGAATAATGAAGGCTCGTAAGAAGAGACCGCACAATCTTTTAGTTGCTGAGGTCACGGAACAGTTGAAAGCCCGATTCATGCCGAGCCCCCAGGTCATTAAGAAGAGAATTGAAGGTTTGATTGAAAGAGAATACTTAGCCAGGACACAAGAAGACAGGAAAGTGTATGTTTACGTTGCATAA

Transcript

OS493_010274-T1

Protein

Uniprot

Uniprot term	Description
B5DF89	Cullin-3 OS=Rattus norvegicus OX=10116 GN=Cul3 PE=1 SV=2
Q9JLV5	Cullin-3 OS=Mus musculus OX=10090 GN=Cul3 PE=1 SV=1
Q13618	Cullin-3 OS=Homo sapiens OX=9606 GN=CUL3 PE=1 SV=2

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|Cullin

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10557	Cullin_Nedd8	Cullin protein neddylation domain	Domain	Interproscan
PF00888	Cullin	Cullin family	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016158	Domain	Cullin homology domain	Interproscan
IPR019559	Domain	Cullin protein, neddylation domain	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR016157	Conserved_site	Cullin, conserved site	Interproscan
IPR045093	Family	Cullin	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR016159	Homologous_superfamily	Cullin repeat-like-containing domain superfamily	Interproscan
IPR036317	Homologous_superfamily	Cullin homology domain superfamily	Interproscan
IPR001373	Domain	Cullin, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11932	CULLIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0031461	Cellular Component	cullin-RING ubiquitin ligase complex	Interproscan
GO:0031625	Molecular Function	ubiquitin protein ligase binding	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0031463	Cellular Component	Cul3-RING ubiquitin ligase complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03869	CUL3; cullin 3	-	DNA repair and recombination proteins	ko03400	deepkoala

Expression pattern

Expression trend for OS493_010274-T1 global co-expression network