Detailed information of OS493_010065-T1 in Lophelia pertusa

Genomic Location: scaffold_24:2388862...2422904
NR annotation: KAJ7337208.1, hypothetical protein OS493_010065 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q9NR09Dual E2 ubiquitin-conjugating enzyme/E3 ubiquitin-protein ligase BIRC6 OS=Homo sapiens OX=9606 GN=BIRC6 PE=1 SV=3
O88738Dual E2 ubiquitin-conjugating enzyme/E3 ubiquitin-protein ligase BIRC6 OS=Mus musculus OX=10090 GN=Birc6 PE=1 SV=2
Q5UQ88Probable ubiquitin-conjugating enzyme E2 R521 OS=Acanthamoeba polyphaga mimivirus OX=212035 GN=MIMI_R521 PE=3 SV=1
 Gene family
Gene familySubfamily
Ubiquitin FamilyE2|UBC|UBC
Ubiquitin FamilyUBD|UBC-like|UBC

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00179UQ_conUbiquitin-conjugating enzymeDomainInterproscan
PF10408Ufd2P_coreUbiquitin elongating factor coreFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR016135Homologous_superfamilyUbiquitin-conjugating enzyme/RWD-likeInterproscan
IPR018247Binding_siteEF-Hand 1, calcium-binding siteInterproscan
IPR045132FamilyUbiquitin conjugation factor E4Interproscan
IPR000608DomainUbiquitin-conjugating enzyme E2Interproscan
IPR002048DomainEF-hand domainInterproscan
IPR019474DomainUbiquitin conjugation factor E4, coreInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13931UBIQUITINATION FACTOR E4Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000151Cellular Componentubiquitin ligase complexInterproscan
GO:0000209Biological Processprotein polyubiquitinationInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0030433Biological Processobsolete ubiquitin-dependent ERAD pathwayInterproscan
GO:0034450Molecular Functionubiquitin-ubiquitin ligase activityInterproscan
GO:0036503Biological ProcessERAD pathwayInterproscan
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0006511Biological Processubiquitin-dependent protein catabolic processInterproscan
GO:0016567Biological Processprotein ubiquitinationInterproscan

Expression pattern
 Expression trend for OS493_010065-T1 global co-expression network
TOP