Detailed information of OS493_009909-T1 in Lophelia pertusa

Genomic Location: scaffold_24:646212...648338
NR annotation: KAJ7337059.1, Hepatocyte nuclear factor 4-gamma [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P79926Hepatocyte nuclear factor 4-beta OS=Xenopus laevis OX=8355 GN=hnf4b PE=2 SV=1
Q14541Hepatocyte nuclear factor 4-gamma OS=Homo sapiens OX=9606 GN=HNF4G PE=1 SV=3
Q9WUU6Hepatocyte nuclear factor 4-gamma OS=Mus musculus OX=10090 GN=Hnf4g PE=2 SV=2
 Gene family
Gene familySubfamily
Transcription Factors FamilyGCNF-like

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00105zf-C4Zinc finger, C4 type (two domains)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001628DomainZinc finger, nuclear hormone receptor-typeInterproscan
IPR013088Homologous_superfamilyZinc finger, NHR/GATA-typeInterproscan
IPR050234FamilyNuclear hormone receptor family NR1 subfamilyInterproscan
IPR049636DomainHepatocyte nuclear factor 4-like, DNA-binding domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24082NUCLEAR HORMONE RECEPTORInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003700Molecular FunctionDNA-binding transcription factor activityInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0043565Molecular Functionsequence-specific DNA bindingInterproscan
GO:0000122Biological Processnegative regulation of transcription by RNA polymerase IIInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0004879Molecular Functionnuclear receptor activityInterproscan
GO:0030154Biological Processcell differentiationInterproscan
GO:0045944Biological Processpositive regulation of transcription by RNA polymerase IIInterproscan

Expression pattern
 Expression trend for OS493_009909-T1 global co-expression network
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