Detailed information of OS493_009865-T1 in Lophelia pertusa

Genomic Location: scaffold_23:3484422...3500733
NR annotation: KAJ7363702.1, retinoblastoma binding protein [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q7ZTY4Histone-binding protein RBBP7 OS=Danio rerio OX=7955 GN=rbbp7 PE=2 SV=1
Q5M7K4Histone-binding protein RBBP4 OS=Xenopus tropicalis OX=8364 GN=rbbp4 PE=2 SV=3
Q6P3H7Histone-binding protein RBBP4 OS=Danio rerio OX=7955 GN=rbbp4 PE=2 SV=3
 Gene family
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyE3|E3 adaptor Cullin RING|CDC20
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DWD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF12265CAF1C_H4-bdHistone-binding protein RBBP4 or subunit C of CAF1 complexRepeatInterproscan
PF00400WD40WD domain, G-beta repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR019775Conserved_siteWD40 repeat, conserved siteInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR001680RepeatWD40 repeatInterproscan
IPR020472RepeatG-protein beta WD-40 repeatInterproscan
IPR022052DomainHistone-binding protein RBBP4, N-terminalInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR050459FamilyWD repeat RBAP46/RBAP48/MSI1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22850WD40 REPEAT FAMILYInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006338Biological Processchromatin remodelingInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0016575Biological Processobsolete histone deacetylationInterproscan
GO:0016581Cellular ComponentNuRD complexInterproscan
GO:0031491Molecular Functionnucleosome bindingInterproscan
GO:0035098Cellular ComponentESC/E(Z) complexInterproscan
GO:0042393Molecular Functionhistone bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K10752RBBP4, HAT2, CAF1, MIS16; histone-binding protein RBBP4-Chromosome and associated proteinsko03036deepkoala

Expression pattern
 Expression trend for OS493_009865-T1 global co-expression network
TOP