Gene detail

Detailed information of OS493_009646-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_009646-T1	SEC63 DOMAIN-CONTAINING	scaffold_23	1091811	1104177	+

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_009646-T1

ATGCGAGGTCTGTTTGAAATCGCTCTTCACCGAGGCTGGCCGACTATGGCCTACAGACTGTTGGCCCTTTGTAAAATGCTCGACAAGCGACTCTGGGCATTCCAGAATCCATTGCGTCAGTTTACAATTTTAAAACAAGAGACACTGGTTAAACTGGAGGGCAAGAACGCGACAGTGGATCGACTTCGAGATATGACGGCCGATGAAATTGGTCATATGATCAAACATCCACGCATGGGCACTACTGTCAAGAACTGTGTTGAACAGATTCCGGCGATATCATTGGCTTCCAGTATTCAGCCAATCACGAGGACTGTTCTTCGGGTGCGGCTGTCAATCAAACCCGAGTTTCAGTGGAACGACAGGGTTCATGGGTCCACGTCAGAACCGTGGTGGATCTGGGTCGAGGATCCTGACAATAACCACATTTATCACTCGGAGTACTTTCTACTGCACAAGAAACAGGTTTTAGCCGAAGAAGAGCAGACACTGGTCTTTACTATTCCAATCTTTGAGCCACTGCCGTCGCAGTATTACGTGCGTGGCGTGTCGGACCGCTGGCTTGGCTCAGAAGTAGTGTGTGCTCTGTCCTTCAAGCATCTCATTTTACCAGAAAAACATCCTCCTCACACGGAACTGCTGGATCTTCAACCTCTGCCAATCACCGCTTTGAAATGCAAGGAGTACGAACTGCTCTATCCGCGGTTCACGCATTTCAACCCAGTTCAGACGCAACTTTGGTTCGCGAAAGAATGGAGGATTGGAAAGTACGTTTTTCAGCAGAAACTTGGTAGAAGTGTCGTGGAGTTAACTGGAGATGTGACCCCGGACATGCGAGCTATCGCTAATGCAGACGTCATTGTCACCACGCCTGAAAAGTGGGACGGAATCAGCCGAAGCTGGCAGACTCGTAACTACGTAAAGGCCGTGTCTCTGTTGGTGATTGATGAGATTCATCTGCTGGAGAAGACTGTTCGAGTGATTGGTTTGTCAACTGCCTTAGCCAATGCCTCGGATCTGGCTGACTGGCTGGGAATAGCTCAGGCAGGTATGTTTAACTTCCGGCCCTCGGTTCGCCCAGTCCCCTTGGAGGTGCACATTTCCGGCTATCCTGGCAAGCACTACTGTCCGCGCATGGCAACTATGAACAAGCCCACTTTTGCCGCCATTCGTTCCCATTCCCCCACCAAACCAGTGTTGGTGTTTGTTTCGTCCAGAAGACAGACACGTCTCACCGCTTTGGAGTTGATTTCTTTCTTAGCTGCTGAAGACGATCCTAAACAATGGCTGCACATGCCCGAAGCTGAGCTGACTCTGTCGTTTGGTATCGCTCTTCATCACGCGGGTTTACACGAGAGAGACAGGAAGGTAGCAGAGGAACTGTTTGTTAATCAAAAGATTCAGATTTTAATAGCCACAAGTACTCTTGCCTGGGGCGTAAACTTCCCAGCTCACCTTGTCGTCGTGAAAGGGACGGAATACTATGATGGCAAGACACGGAGATACGTGGATTTCCCCATCACAGACGTGCTGCAGATGATGGGGCGCGCAGGGAGACCACAGTATGATGAGCATGGGGTGGCTGTGATCCTGGTACACGACATCAAGAAACACTTCTACAAGAAGTTTCTGTACGAGCCATTCCCTGTCGAATCCAGTTTGCTAGAAGTGCTTCCAGATCATTTAAATGCAGAAATTGTGGCGGGCACGATAGCGTCAAAACAAGACGCAATGGATTACCTCACTTGGACGTACTTCTTTCGGCGCCTGCTCATGAATCCGAGTTATTATGAGCTGGAAGATACAGCTGATGATTCAGTGAATAAGTTCCTCTCTGCACTGGTGGAGAATGCTGTGACGGAAGTGGCGAATTCTGCGTGTGTGGAGATGGGCGAGGACGGAATGGCGGTAACACCAACCACTCTTGGAAGGATCTCCTCTTATTACTACTTGAGCCACTTGACACTGCGCATGTTCAATGAACGGTTACACGCTGGCTGCACCCTACCAGACCTCATACAGGTTTTAGCGGATGCTGAGGAATACTCTCAGCTGCCAGTTCGTCACAATGAAGACATCATTAACAGTGACCTCGCGCCCAGTCTCCCTCTGGAAGTGGACCCTCACTCGTTTGACAGTCCCCACACCAAGGCACATCTGTTATTTCAAGCGCATTTCACGCGGCTACCGCTGCCAAGTACTGACTACTTAACAGACACGAATTCAGTTCTTGATCAAGCCATCAGGATCTTGCAGGCAATGATTGACGTGTCGTCAGCTGAAGGCTGGTTGGCCACAGCGTTACGCTGTATGCATCTTGTGCAGATGGTGATTCAAGGGCGTTGGCTTCATGACTGCACCCTCCTGACCCTGCCATGTGTTGATGCGGATCTACTGTCGTTCTTCAGAATGGACGGTCGTTCATTACAATGCCTCCCTGAGCTCTTGGATGCTGTGAGAGGCGAGAGGAAGGTGTTGAATACAATGCTGGGAGATGCACTGAGTCCAGGAGAAATAACTGAGGAGTATGTCCTAATAATTCAAGTTACCAAGGAATCATGTGGTTTTAAGCGGTCCAACACAAAGGCTCATGCGCCATATTTTACCAAAGCAAAAGACGTTGGCTGGTGGGTGGTCCTTGGCGAGATGGACTCGGGCGAGTTGTTGGCCGTGAAAAGAGTGGGTCAAGTACGCTCGTCAAGCACTGTCTCTTTATCCTTCTACACGCCTGAGGGACTGGGCAGGAGGATCTACACGGTGTATCTCATCAACGACGCCTACTTGGGAATGGACCAACAATATAATGTTCCTTTGGAGATTATTCAGTCTGACATCTCTAGTCAAGTGAACACAGAGGTTAACTTCGATGGCTTGTGA

Transcript

OS493_009646-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF02889	Sec63	Sec63 Brl domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR004179	Domain	Sec63 domain	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR014756	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR035892	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24075	SEC63 DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0043138	Molecular Function	3'-5' DNA helicase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_009646-T1 global RNA-seq network