Detailed information of OS493_009609-T1 in Lophelia pertusa

Genomic Location: scaffold_23:707433...726292
NR annotation: KAJ7363455.1, AT-rich interactive domain-containing protein 1B [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
A2BH40AT-rich interactive domain-containing protein 1A OS=Mus musculus OX=10090 GN=Arid1a PE=1 SV=1
O14497AT-rich interactive domain-containing protein 1A OS=Homo sapiens OX=9606 GN=ARID1A PE=1 SV=3
E9Q4N7AT-rich interactive domain-containing protein 1B OS=Mus musculus OX=10090 GN=Arid1b PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF12031BAF250_CSWI/SNF-like complex subunit BAF250/Osa RepeatInterproscan
PF01388ARIDARID/BRIGHT DNA binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036431Homologous_superfamilyARID DNA-binding domain superfamilyInterproscan
IPR033388DomainSWI/SNF-like complex subunit BAF250, C-terminalInterproscan
IPR001606DomainARID DNA-binding domainInterproscan
IPR021906FamilySWI/SNF-like complex subunit BAF250/OsaInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12656BRG-1 ASSOCIATED FACTOR 250 BAF250Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0005654Cellular ComponentnucleoplasmInterproscan
GO:0006338Biological Processchromatin remodelingInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0016514Cellular ComponentSWI/SNF complexInterproscan
GO:0031491Molecular Functionnucleosome bindingInterproscan
GO:0035060Cellular Componentbrahma complexInterproscan
GO:0045893Biological Processpositive regulation of DNA-templated transcriptionInterproscan
GO:0071565Cellular ComponentnBAF complexInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K11653ARID1; AT-rich interactive domain-containing protein 1-Chromosome and associated proteinsko03036deepkoala

Expression pattern
 Expression trend for OS493_009609-T1 global co-expression network
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