Gene detail

Detailed information of OS493_009542-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_009542-T1	CLASS II CROSSOVER JUNCTION ENDONUCLEASE MUS81	scaffold_23	48688	66015	-

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_009542-T1

ATGGAGCAACCCCAAGGTGCAAACAACAGAGGTGGCAGAGGAAGAGGTAACAACAGGGGTAGGAGAGCCAATGGAAATGGCAGAGGGGGTAGGAGAGCACCTCAGAAACAAAGGATGTGCGAGGACTGCGAGGAGAATGCAGCTACTCAGTTCTGTGCCGATTGCCTTCCACCATTGGTTCTTTGTGATGACTGTGCAGTTGTGCTCCACAGGGGGGCAACAAGAAGAAATCACCTGTTGAAAGATGTCCTAGATGCACCTGCCCCAGTAAAGGACAAGGGCTACACCCCTAAAGCATACAGGTCGCCATTTGCCATGTTGGTGGCATTTCACAGGGCTTTTAATGAAGTTCCCCGCAAAATGAGTTTAACTGCAGATGAGCTGAAATCCAGAGCACAACCTCTAACAAACACAGATTTGGAAATCAAACAAGGGAGATGGGGAGGCTTTGATTCAATGGAAACTGCCTTGATGAAGAATGAACTTGTACAGAAGGAAGCTGAAACACCTAAGTACTCCCTCGTGGAAAAAGGCCAGCCCTTAGCTGCAAGGTGCTCAGAATTTGATTATGCTGTTCAGAATCTCACTCAAGCGGCTTCAGTTCCAACTATACCGGTCATGGCGGCAAGGCCAGTGTACCAAAATCGTCAGGTATGCTTGTTAGTAGACAGCGAAGAGCCATTGAGGGAGAGGTTTGTTAGAGTGGCACTACAGCGAGGACTGTCAGCAAAGACAAGGAAGCTCCCTGTGGGGGATTTCCTGTGGGTGCTACTTCCCCCTGGAGTGAATCCTGGCACGGTCAGAGATATGCCAGAACAGGAACTGGTTCTTCCTATGACTGTGGAGAGAAAAACATGGGATGACTTGTGGTCCAGTCTCAAGTCTACAAGATTTGTGAACCAAGTCCATAGAATGAAGAATTGTGGTTTAGAGAATCTTTTCTATCTGGTGGAGGGTAGTCCTAAAGATCTAAAAGGAAAGCCAGGTCCTGAGGTTGCAAGTTACCTGCAGGACAAACTTGATAGTCTGCTTTTAGAGGACCAGTTTCTTGTGAACCGCACTGGCTCTTGGCTAAAAACTGTGGAATGGCTGTGCCATTTAACCAACATGGCAATTGAGTCCTTGCAGTCAGAAGGAAGTCCTAATTTAATGACATACAGTGAATTTTCAAGGGGAGGTAAATTACAAAGGAACCTAGCCAGTATTGGTACAACAGCTGCTGTTCCAGTTACTTCTACTGTTTGGTCAGCAACAGAATTTACAGATATTATACGAAGCCATAGCCGTGGTGGAATGGAGCTCAGCAATCTACCTGTCAGTGGTGGATATGGTTTCAAAGAAGAAAGATCTTTGATTGTGATCCAAGGCCTTACTCTTTATAATAAGCAATGTCACAAGTTACTGGACAAAGCTCTTGCTAACCTCTTGGAGAACACACATCAAACTGCAGAAGCTTGTGTTCAAAGACATCTTCAAGGTGTCACAGACCAGCTGATTCATGAGGACGTTCCACAGTGGTACATTCTCTGGCTACAGGTTTTTAAAGGAGTGCTGGTGCGTAGAACAGATACTGAAGAAGAGTCAGCAGAAATTCTGGGCAAATTTTATCAAATGTCAACAGGTGGTGTAGATGCTCTTCCACGTAATGAAGAAATTGATCATATTAGCACGCAAGAGGAGGAAAGGCTGCCTGAGGGTGACCTTATATTTGCTAGTGATTCTCAAGAGGAAGATTCAATGCTCCGTCAGGCTCTAAGAGCATCAGCGTATGAAGACAAAATGCCAGAGGATGTCTTACACCCTTCCTTGGTTAGACCTCCAAGTAGCACCACAACAAAACCATCTGAACAGTTGGTTCCCAGCAGTTCAGAGCATGGATTACTGAAATATCCCCTGGATTCCATGAATGAAAGTGAACAGCTCGAGCTAGCTATGAAACTCAGTAATGCTGAAAATGAAACACCTGGATCTCACAGCGGGCGTAGTCTAGGTTTTAATAAATCCCCTGCAAAAAGGCCTGTTACAAGTTGTGCAACAGAGCAACACACAGCTAGCTCACACACTCCTGTTAGGCCAAGGACTAAGATGGAGGTGCGTAGCCCAACACATACAGCTGTTTGTGATCACAAGACAAAAAGTGATAGTCCAAATGACGAGCTTGAGAAAGTACTTAAACAAAGTTTGGAAGAGTTTGAAAACATGAAAAAAAAACAAGACCACAGAAGGAACACATCTAACACGGATAGTGACCTGGCGAAAGCTTTAGAACTAAGCAGATTGGAATGTGGTCAGTCGAGGAATAACACCATGAGCCACAAGGTGGAACAACAAGGTGATATTGGTGGCCCATCTGACAAGGATGAAGAGCTAGATAAAGCATTGGAATTAAGTAAGTTGGAGGCTGAAACAATGAAAAAAGAACATCACTGTGTTGATATCACTGATGTACATGTCCCCTTGGAATTGAACCAAGCAGAGGTAGAACAATCAAGGGAAAAAGAGAAAATGATCCATGAACAAAGTACAACAGATACAGACCTGCAAAAAGTCCTAGAACTGAGCAGAGTGGAATATAAACAATGTGAGACAGATACTGTGATTATGTCGAATGGTGAGGGTCAAAGAGAGGCAACAATCATAGACCCTACATCCAAACATGAGGAGGACTTGGCCAAAGCCTTAGAAATAAGCAGAATGGATTGCAAACACTTAGAACGGAACATTGGCAACGATGTTTTAGGCAAGGCAACACAAAACGGTTCAATGAAGAGCGAAGTAGATGATGATGATGTAGCAAAAGTGTTGAAACTGAGCAAAACGGAATGCAGCAAACCAGAACGAAGCATTGGTTTACAACATTTGGATGAGAGGAAAGAACAAACCAGCAGTGATCTTGAAAGGGCCTTAGAGTTGAGCAGAATTGAATACACACAATCCAACAATTGCAGTTTGGATGGAAAAAACGAAGACTCAGATTCAGATATAATTATTATGGAAGAAAATGTTGGCGATGTCCCAGCAAGGAAAAGAAGTGTTCCTGCTCAAACAATGAAATGTTCCTCAACACCAATGAAAAATTCTCCTTTGATTGATGCTGATGTTGACATTGTTCCTTCCAGTGTAACGTCAGAATGGGATCCAGATCCTTTTGATGCATTGGATCATGCCACACCAGCTGGTAGCTCAAAGTATTCTGCTATCATGTTGGACTCCCAGGAACTTGATGATGAGTTCTTGGATGCACCAGTGCTTCAGTTGGACGACACTGCCAAAACTAATAGGAAACAGCTATTCTCGTCAGAAGAAGAAAACACTGTCGATGATGACTTTGCGTATGCATTAAAAGTCCAAGAAGAGCTGAACAAACCAGCTAAGGGCCCTGATAATCATCATGACTCTCCAAGTAAGAGAAATACAACTTGCCTTGAGCTTGACGACCAACTCACATGTTATCGTGAGTCACAGAAAGAAAGATATGGTACACACTCTGGAAAGGGAGACAAATCTACACGTGGATTTGATTTCAGGAGAAATGTGGCTGCAATTGCCTGTGGCAAACCAGTGCAAATTGGCATTGCAAGCCCCATTAGTAGGCCAGGTAATTCTCAGAAGAGGCCGGATTCACAAAGAGTGCTTGGCGACAAGCCATTTCCTGGTAGCAGAATTGACAGAGACAAAAATCAGGGTCCTCGCAAAGATGAAGCGTATGTCATAAGGGATGATGATGCAGGGTCTAAAACAGTTGGTTCAGCATCCAGGAGCGTAATGAAAAGTGGTGAGAGATCTTTTGTCTCCCAGTCAGGAACTACATCATCTCCAAGGCCATTTTCATCTTCTGCCAGCAGCAGTTTTGAAAGAGTCCACAGACGTGATCCCCCTACTTTCTCAGGACCTTTTTCGCCACCCTCTACTGTTGATTCACCATCTGTTACACCTTCAATATCAAGAGATACATCAGCTGCAAGTCACAGTAAAAGCAGCAGTGACAAGCCAATGGGACCCAAGTGTGGGGCTTGTGGAGAAGTAGGACACGCCAAAACGTCAAAAATGTGTCCTCATTACTACTCTGCAGAGGCTGTTCAAAGGAGAGAGGAACAATCACGAAAGAGGAAAGCAAAGAAGGAGGAGGACGAAAGAGACTTTAATGATAACCTGGGTGCATTGGCTGCTCAAAGATTGGTAATCGAAGAACAACTGAATCAGCTGAGACAACAATCACAAAACATGGCAAACACTCAAAAAAAGGTAGAGGATGCAATTAAACGAAGAAGAAAGAAGTAG

Transcript

OS493_009542-T1

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Alpha-Helix\|UIM

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02732	ERCC4	ERCC4 domain	Domain	Interproscan
PF15288	zf-CCHC_6	Zinc knuckle	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003903	Conserved_site	Ubiquitin interacting motif	Interproscan
IPR006166	Domain	ERCC4 domain	Interproscan
IPR011335	Homologous_superfamily	Restriction endonuclease type II-like	Interproscan
IPR033309	Family	Crossover junction endonuclease Mus81	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR041670	Domain	Zinc knuckle	Interproscan
IPR047416	Domain	MUS81, XPF-like nuclease domain	Interproscan
IPR047417	Domain	MUS81, winged helix domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13451	CLASS II CROSSOVER JUNCTION ENDONUCLEASE MUS81	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000712	Biological Process	resolution of meiotic recombination intermediates	Interproscan
GO:0000727	Biological Process	double-strand break repair via break-induced replication	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0004518	Molecular Function	nuclease activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006302	Biological Process	double-strand break repair	Interproscan
GO:0006308	Biological Process	DNA catabolic process	Interproscan
GO:0008821	Molecular Function	crossover junction DNA endonuclease activity	Interproscan
GO:0031573	Biological Process	mitotic intra-S DNA damage checkpoint signaling	Interproscan
GO:0048257	Molecular Function	3'-flap endonuclease activity	Interproscan
GO:0048476	Cellular Component	Holliday junction resolvase complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_009542-T1 global RNA-seq network