Detailed information of OS493_009450-T1 in Lophelia pertusa

Genomic Location: scaffold_22:2987429...3003053
NR annotation: KAJ7374113.1, hypothetical protein OS493_009450 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P79987Protein HIRA OS=Gallus gallus OX=9031 GN=HIRA PE=1 SV=2
Q61666Protein HIRA OS=Mus musculus OX=10090 GN=Hira PE=1 SV=3
O42611Protein HIRA OS=Takifugu rubripes OX=31033 GN=hira PE=2 SV=1
 Gene family
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyE3|E3 adaptor Cullin RING|CDC20
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DWD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF09453HIRA_BHIRA B motifMotifInterproscan
PF07569HiraTUP1-like enhancer of splitFamilyInterproscan
PF00400WD40WD domain, G-beta repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR020472RepeatG-protein beta WD-40 repeatInterproscan
IPR019015Conserved_siteHIRA B motifInterproscan
IPR011494DomainProtein HIRA-like, C-terminalInterproscan
IPR001680RepeatWD40 repeatInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR031120FamilyWD repeat HIR1-likeInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13831MEMBER OF THE HIR1 FAMILY OF WD-REPEAT PROTEINSInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0006338Biological Processchromatin remodelingInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0000417Cellular ComponentHIR complexInterproscan
GO:0000790Cellular ComponentchromatinInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006325Biological Processchromatin organizationInterproscan
GO:0006336Biological Processchromatin organizationInterproscan
GO:0006351Biological ProcessDNA-templated transcriptionInterproscan
GO:0031491Molecular Functionnucleosome bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K11293HIRA, HIR1; protein HIRA/HIR1-Chromosome and associated proteinsko03036deepkoala

Expression pattern
 Expression trend for OS493_009450-T1 global co-expression network
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