Gene detail

Detailed information of OS493_009372-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_009372-T1	SH3 MULTIPLE DOMAIN	scaffold_22	2243766	2259826	-

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_009372-T1

ATGTTCTTCGATTTACAGGCTGGCTTGCGACAACTTTTTCAGGAAAAGCAAAATATTGCAATTCCAGAATTGCCTGTTGCTCGCTTGGCTTACGCTGGTGGAATGTTGTTTGGAGCACTGGCAAAGAAACAGTGTAAACACATCGAAGAATTCTGCCAGAGAGTGATCCAGCTGCCGCCAGTTGTGTCTCAGTCTGATATTGTTCTGCAGTTCTTCAGCCAGTGGGGAACGGATGCTTTTGTAAGGAGTGATAACGAGAAAAGCAAGTTCCAAACATCTCCTACTGGAAAAAGTGATGAACAGTTTGTAGAGAGATATCAATCATTTGCCGAGTTTGCTGGTGCTGGAAGAGGGGAGATGAGTTTAAAAGAAAATGAGGTTGTGACGGTCATTGAAAAAAATAACACAGGTTGGTGGCTGGTGGCAAATTCAAGAGGCGAGCATGGCTTTGCTCCGGCGACATTTCTTGAACCAATAGATGCCGCCGGTCAACGATCAGAAGAGGAGGAATGGAGAGACATTGAGGATGATGATCGATTTTGGGTAGCTATTGAGTCATACTCAGCAAAGAGTGAGGATGAACTAACGTACAGAGCTGGTGAGGAAGTTGAAGTTCTGGCTACTAGTAACTTTGGCTGGTGGAAGATAAGAATAAAGAATGATGTTGGCCTCACACCCGGATCCAATCTGACTCCAAAGCAGCCCAGTATAGATCCCTTCATGACTGACGAACAAAGAAAACGGGGATCCTCGTATTCCAGCATCAGTGGCATATATGCAAGTATCAAGTCACCTCCTCCAAGAAGAGATTCCAGTAAAACCAAGAAAAGTGAAGCCAACAACCGTCACGACATTGCAAGGGCAAGAGTTTTACGCTCACAATCCACACCTCATGCTTTAGAATACGCTACAGTGGAAATAATACCAAGTCCGTCATCAGCAAATAGAAATCCTCAATTTAGTTTTGAAAATAACAGTGAAAGTGTTCCTCAGTACGCCTCTGTTATCCCAAAACATTTGAGACATAGATCCCACAGCATGAGTGATGACGGGACGGACGATTCAAGGAGACCGAAACGGAATGGCTGTCCAGATCTCCCGCCCCCTCCCCCTGTGATGGTCACGCATAACTCCCATGGTGATCATGATGACCCGGGCTATGCTAAAGTGCACGAGTTTAGACAACCTCTACTCACCAGTACCCCGAGAGTACGTTTATTGCATCCTCCAGATGATGGCATCGTCAGGTTTAGTACGCGCAAATATGAGAATGTTGGTAGCAGTGCGGACCATACATACACTCCTGGAGAGCATTATGTGGCCATAACAAATTACTCTCCTCCAAGTGATCGCCCTGAAGACCTGTCGCTATCAACAGGCGAAACCGTGCGCCTCCTCTCCGAGGACGGTGTCTGGGCTTTTGTGTGCACCGTGGACCCGGCTAAGAGGCGAGGGTGGGCACCGTCTTCGATGCTGAAGAGGAAGGGAGGACCACAGCACCCCTCTACCAGGAGGTCGCTGTCTGTAGGTGATATTTACGACGCATTTCAAGAGGAAGAAGCTGCATCGCAGAAGATGACGCCGATACAGAAGCGTCCTGTGCCGACACCGAGGGGCGATCTGGAGTTTAGGAAGATGGATGTGATGGGTGCCCCGAGCGAGGATGCACCTCCGCTGCCTGGAGCCCCACTTGGACACGATCGACAGACTGGACAAGTGAATGCGCACTACTTTTCGCGGGAAGACTTCACAACAAAAAATAGCAACTGTATTTGTGTACGCAAGGGAGAGGTGGGTGAGTTACTGGAGATGCAAGCCTCGGGCTGGTGGAAGATGAACGTCGAGGGTGTTGAAGGGTGGACGCCTGGCGATTTCTGGGAACCGCTACAGGTTGAGGACGAGACTCCCAATACTAGTCAAAGGGAAAGGATAAGTTCTTTTGGGGACGAGTTATGGTATTACGGTAAAATGTCACGTCAAAAGTGCGAGGAACTTATGATGAGGAATGCCAAAGAACTGGATTACTTGATACGGGAGAGCACTCAAAAGTTTGCCTCATTTGTTCTCTCGGTCAAGTATGGCGGAAAAATCCGACATTTTCCTATAGAGCTTACCCCAAGCGGCCGTTACGTCATCGGCAAGCACGCGTTTGACGGTCTGACGGAAATCGTGACGTTTTACAAGACACATGCGTTGTTTTACACGCGAAACAAGGAGTCAGTGAGCCTGGGTGAATCATTCAGAGGAATGTAG

Transcript

OS493_009372-T1

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|SH3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00017	SH2	SH2 domain	Domain	Interproscan
PF00018	SH3_1	SH3 domain	Domain	Interproscan
PF07653	SH3_2	Variant SH3 domain	Domain	Interproscan
PF14604	SH3_9	Variant SH3 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000980	Domain	SH2 domain	Interproscan
IPR001452	Domain	SH3 domain	Interproscan
IPR001683	Domain	Phox homology	Interproscan
IPR036028	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR036860	Homologous_superfamily	SH2 domain superfamily	Interproscan
IPR036871	Homologous_superfamily	PX domain superfamily	Interproscan
IPR051228	Family	NADPH Oxidase and PX Domain-Containing	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15706	SH3 MULTIPLE DOMAIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0016176	Molecular Function	superoxide-generating NADPH oxidase activator activity	Interproscan
GO:0035091	Molecular Function	phosphatidylinositol binding	Interproscan
GO:0042554	Biological Process	superoxide anion generation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_009372-T1 global RNA-seq network