Detailed information of OS493_009344-T1 in Lophelia pertusa

Genomic Location: scaffold_22:2037867...2044174
NR annotation: KAJ7374015.1, E3 ubiquitin-protein ligase BRE1A [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
O75150E3 ubiquitin-protein ligase BRE1B OS=Homo sapiens OX=9606 GN=RNF40 PE=1 SV=5
Q5RAU7E3 ubiquitin-protein ligase BRE1B OS=Pongo abelii OX=9601 GN=RNF40 PE=2 SV=1
Q5VTR2E3 ubiquitin-protein ligase BRE1A OS=Homo sapiens OX=9606 GN=RNF20 PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00097zf-C3HC4Zinc finger, C3HC4 type (RING finger)DomainInterproscan
PF08647BRE1BRE1 E3 ubiquitin ligaseCoiled-coilInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001841DomainZinc finger, RING-typeInterproscan
IPR018957DomainZinc finger, C3HC4 RING-typeInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR013956FamilyE3 ubiquitin ligase Bre1Interproscan
IPR017907Conserved_siteZinc finger, RING-type, conserved siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23163RING FINGER PROTEIN-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0046872Molecular Functionmetal ion bindingInterproscan
GO:0004842Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0033503Cellular ComponentHULC complexInterproscan
GO:0061630Molecular Functionubiquitin protein ligase activityInterproscan
GO:0071894Biological Processobsolete histone H2B conserved C-terminal lysine ubiquitinationInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K10696BRE1; E3 ubiquitin-protein ligase BRE1EC:2.3.2.27
Ubiquitin systemko04121deepkoala

Expression pattern
 Expression trend for OS493_009344-T1 global co-expression network
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