Detailed information of OS493_009226-T1 in Lophelia pertusa

Genomic Location: scaffold_22:1025443...1027789
NR annotation: KAJ7373902.1, Protein tssc1 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q5M8I4EARP-interacting protein homolog OS=Xenopus tropicalis OX=8364 GN=eipr1 PE=2 SV=1
Q4R571EARP and GARP complex-interacting protein 1 OS=Macaca fascicularis OX=9541 GN=EIPR1 PE=2 SV=1
Q3KPT3EARP-interacting protein homolog OS=Xenopus laevis OX=8355 GN=eipr1 PE=2 SV=1
 Gene family
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyE3|E3 adaptor Cullin RING|CDC20
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DWD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00400WD40WD domain, G-beta repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001680RepeatWD40 repeatInterproscan
IPR040323FamilyEARP and GARP complex-interacting protein 1Interproscan
IPR019775Conserved_siteWD40 repeat, conserved siteInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR14205WD-REPEAT PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0016567Biological Processprotein ubiquitinationInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K23289EIPR1, TSSC1; EARP and GARP complex-interacting protein 1-Membrane traffickingko04131deepkoala

Expression pattern
 Expression trend for OS493_009226-T1 global co-expression network
TOP