Gene detail

Detailed information of OS493_008888-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_008888-T1	MICROFIBRIL-ASSOCIATED GLYCOPROTEIN 3	scaffold_21	1073411	1096950	-

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_008888-T1

ATGTCGAAAGCTTTGGATATCATGTACGTTGTACCAAAGAAAGCAAATGATATGATGAACGTTGGAATGCTGGAGGGCTACACGGGCAAGATTGCGGCTCAGGGTCAACTAATTATGCAGGACACCTTGATTGTGGCCGACCCCGAGACTCGCAAGCCGTGCAAGCGACAAGTGTTCCTGTTCGAGCAGCTCATGATCTTTAGCGAACCTTTTGAGAGGAAGTTGGATTGGACGGTGTACATCTACAGACACAGCATCAAGGTGAATCACATGCATTACATGGAAGGAGTAGGCGATGATCAGTTGACGTTTGCCATCTGGACCGGCTCAGATCCCGATGCGGAGATCTTTACCATGACCGCGAGCTCAGCAGACAAGAAGAAGGACTGGTTACTAGCGCTGAAGAGGCTTCGAGAATCGCAGCACGCTTTCGCTATAGAATCAACTGACGCTGGTCAAATGTTAAACCAAGGACACAGAGCTTTAGAAAGACCAATCGAATATCAAAAACAACAAGCTAACGGTCCCCCAGCCTTGACACCCGGTGGACCTGTGACGACACAAGGTCAGGTGACCCCATCAAGCAGCACTACTCTACCGATGACGACTGCAGCTAGTCGCGGGCACAGCCTTAGTCTTCCTGACACTGGCTCTCTCAAGAAACCATCACAGATACCAGTCGCTTCCAGTCCGACTAATCGTCTAAAACACATGAATCTCATCGCCCTTGAAACAGCTCAATCACTGGAAGATCTTACGTCACCTTTCTCAACTGCTTCGCGTAACAAAGAACGTTTCGTGGTACTGGAGGATTTCAAATCTAAAGACAAGGATCATCTTTCTGTGAAGAAGGGTGAAGTGGTGTATTTAGTATCCAACAAGAAACACGACAAGAACTGGAGATATGTTTGTAATTTCACCGCCGATAAACTTGGACTCGTCCCCGCGAAGATTCTCAGAAAAGAAGCTAACAACAACGTCGAAGAGTCAGATGCTTTGCTCTCTCCCAAGAAAACAACGTTTTCAAGGAAGAAGGTTTCAAGGCACGAGAGTTTTACGAGCGACGACAAAGCTCGACGGACGCAGAAGAAACAGAAAGACTCTTATCTGAATGCGTTCTCCAACAAAATAAAACAGAATATAGATAAATACCGCACTGAATTGAGTGTTGAGAACGACCATGAAAACGATGATATTCCTGCATCATCAACGAATAAAAAAGAAAACTCTACCGAAATCACATTCAACGAAGTCCTTCATGACGTCACTGTTGTAAGTGGCCAGCATTTGCGGCTCCAGTGCAAATTATCATCGCTCCCCACCCACCCCCTCACGGTGACCTGGACTAAGAACCAGCATTTCATAGAAAATTACGACAATGTCACGCTAGTTAACGACGGACGCACACTTGCGTTGGACGTCACGCCAACAGAGACGGCTGATACAGGTCACTACAAGTGTTATGTCACGTGCGGGTCACGCCGCATCACGTGCTCAGCTTATGTGGCCGTTTTAGGTGTCCCAGAACCTCCTTCGAAACCTTTCGTCAAAGAAATGACCTCGTCATCACTCGTACTACACTGGGAACCACCGCAGCTAGACGGTGGAAAACCAATCCTGGCTTACACGGTGGAGTACAAGGAGACTGGGGTGAGCGTGTGGCAGGCGGCCGTGCCATTTGTGGCGGGAAACAGTACGTTGATTGACGACTTGACGCCCGGTGCCACGTACCAGTTCAGAGTCAGTGCTAATAACGAGATCGGTATCAGTCGGCCCAGTCCTATCTCGGACTCTATAACACTGGATGTTGAAAGCGATGACGAGAAGAAGAAGAAGCCCAAGAGGAAACAGCGCGCCAACTCGCGAACGGAACCTATTCTTTGGAAAAAAGACATTGATACATGTTACAACATCTACGCTGAACTGGGAAGGGGCCGATTTTCTGTTGTAAAGAAAAGCGTCGAGAAAGTAACAGGCAACGAATACGCCGCTAAACTGGTCAAGAAGCGAATGGTTGGCAAAGAGGAAGTCGAGGATGAAATTCAACTTCTCAGAAGACTAAAACATCCTCATTTGAGCAGCTTTATCGACGCTTATGACACTCCCAAGAACTATGTAGTAATCATTGAATTTTTAGCTGGTGGTCGGTTGTTCGATCATCTGGTTGTTATGGACAATTTAACGGAAAAAGTCGCTATTGGTCACGTGAGGGAAATGCTTGAAGGCGTTCAGCATCTAAGAGATCTCTCTATTGTGCACCTCGACTTGAAGCCTCAGAACCTTCTTCTTGATAGCGGGCCGTTGCCAAAAGTCAAGATTATTGACTTTGGTTGTGCGACGGAAATTTCCGATTCAGAATCTGTTGTTAAACAAGTGTTTGGAAATCCCGAGTGTTCAGCACCAGAGCTAGTGAACAGAAAACCTGTGGATTTTACAACAGACACGTGGAGTATAGGAGTTATCACCTACGTCATATTAAGCGGAGTTTCACCATTTCAAGGGGAAACAGTCGAAGAAACATGTCGTAACATAACAGAGGTCAAATACGAATTTAATCCAAAGCACTTCGAACCTATCTCACAGCAGGGCAAGGATTTCATCTCCTCGTTACTCGTTCAAAATCCAAAAAAAAGAGCTGACTGCCAGAACTGTTTAAATTCGCAGTGGATAAAGATGATCAGTCCCAGGCCCCCTAGTCCTGTCAAAACAGTTAAACTCAACACAACACGGTTAGCGGCCTTCAACGCAAGGAGAAGAAATCAGCACGATATCACACCTCTACCATCAAGCAAAAACAACAAGAATGTTACAACTGTATAG

Transcript

OS493_008888-T1

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|SH3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00018	SH3_1	SH3 domain	Domain	Interproscan
PF00041	fn3	Fibronectin type III domain	Domain	Interproscan
PF00069	Pkinase	Protein kinase domain	Domain	Interproscan
PF07679	I-set	Immunoglobulin I-set domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000719	Domain	Protein kinase domain	Interproscan
IPR001452	Domain	SH3 domain	Interproscan
IPR001849	Domain	Pleckstrin homology domain	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR003961	Domain	Fibronectin type III	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR008271	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR011993	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR013098	Domain	Immunoglobulin I-set	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR017441	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR036028	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14340	MICROFIBRIL-ASSOCIATED GLYCOPROTEIN 3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004672	Molecular Function	protein kinase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_008888-T1 global RNA-seq network