Detailed information of OS493_008694-T1 in Lophelia pertusa

Genomic Location: scaffold_20:3123025...3135618
NR annotation: KAJ7386557.1, Polypyrimidine tract-binding protein 2 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q9UKA9Polypyrimidine tract-binding protein 2 OS=Homo sapiens OX=9606 GN=PTBP2 PE=1 SV=1
Q29099Polypyrimidine tract-binding protein 1 OS=Sus scrofa OX=9823 GN=PTBP1 PE=2 SV=2
Q91Z31Polypyrimidine tract-binding protein 2 OS=Mus musculus OX=10090 GN=Ptbp2 PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13893RRM_5RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)DomainInterproscan
PF11835RRM_8RRM-like domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000504DomainRNA recognition motif domainInterproscan
IPR006536FamilyHnRNP-L/PTBInterproscan
IPR035979Homologous_superfamilyRNA-binding domain superfamilyInterproscan
IPR012677Homologous_superfamilyNucleotide-binding alpha-beta plait domain superfamilyInterproscan
IPR021790DomainPTBP1-like, RNA recognition motif 2Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15592MATRIN 3/NUCLEAR PROTEIN 220-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006397Biological ProcessmRNA processingInterproscan
GO:0003676Molecular Functionnucleic acid bindingInterproscan
GO:0003729Molecular FunctionmRNA bindingInterproscan
GO:0043484Biological Processregulation of RNA splicingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K14948PTBP2, NPTB; polypyrimidine tract-binding protein 2-Spliceosomeko03041deepkoala

Expression pattern
 Expression trend for OS493_008694-T1 global co-expression network
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