Gene detail

Detailed information of OS493_008654-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_008654-T1	TYROSINE-PROTEIN KINASE	scaffold_20	2608329	2641555	+

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_008654-T1

ATGGCGTCTTCAGAAGATGGTGTGAAAACAGGCGATCTTATCGATGATGAAACTTCCCAGAATAGATACAATTTAAAAAGAAATCTCTCTGGCCGTAACCTGATAGTGGATGAAGTGGCAAAGGACGGTAACTGTTTTTTTAGATCAGTAGCCTTACAGCTTTGCAAACATTTAGCACGCTACAAGGAAAATATAGGAGAACATTGTACTTCACTTGGACTAGGAAGAAGTGAGGAAGAGGACACTGGTAAACTCAGGCAACTGCTCGTTAAGGAACTGAGCAAAAATATCGAGGAGTACAAAAATTGGATGACCTCTGGAAGTGATATGTTGGAAGAGATTGGAAAAATTCAAGAATCTGCTAGTTCAGATGAAAGTAGTCAAAAGGTCATTACTGAGACGCGATTCACCGGCGGTACATGTATGAATAAGAAAGAGCCCACCAAAATTCCATACCACAATTATGAGAATGAACAGAATAGGAACACCTACCAGCCACTGATTCGATACGATGAGACCGTTGTATCTCCAAGTGATGATCCAAGCCGACTGCCGTGTAGAGATAGCAAACGGCAGCCGTCCGAGTGTTCATATGCGAGCGGATCTACTGGCTGCACAGAACTGTGTTCAACTTTGAGTGACACAAGTTCAGACGTTTCTTCGCAGATTCCAGATGAATCTCCAAGCCGTAATGATAGACGTAAACATGGGGCCCATTACGCTGTCAAATTCAATAACTACAGTACCGGTACCATTGTGGTTGGTGAAAAAGCAAAGATCGTGAATGTTCAACCAAGAGATGATACTGATAATATTGATCTGCCAAGCACTAGCACGGTACAGGCTTCCATGCCTCCCGACCCTTCCCCATCTGAAGTGGTCGACGCAATGACTGACACTGGAATCTCGGAGGAAAATATAACCCAAACTCATGTCGGTGAGAATTGTCCAGGAACGTATACGTACTGCCCAGTAATCAACCATCGTCAGCAAGGTGGAAACAAAGGACCAAAGAGGAATGCAAGGCCTGGTCGAGGCATTCTAATCAATAAAGGAGGCGTGAAATGTCACTGGTCGATCGAAACATTTCTCGAGAATCCAGAAAAATTCATCCAAGACATGGACACCAACGCTGGTTCGCTCAAGGAAGAAAAAGAAGACTTCATACTTCATAAAATTCTCCCGCATCAGGAAAAAAAGTGGGGTAAATGCTTTTCGTCTAATGAGGAGATCTACGAGATTCTAGCCAAAATATCTTGCAGCGGAAAAAGTGGTAAAGTGGTGAGACAGGCTCTTCAGTTGCTTCTTCACCTGATCTGCAAAGACAACTTTGATAGCTGCAACCAGAACTTGCTGGGTGTGGAAGCAATTACAAGGTCGTCCATACTGTCGCCCGACGGATTATTTAAAAAAGACAGGCATTCAGAAAGAGAACTCAAACTTCAAGTATACAGCCGTATTTTATCATCGCTGGTCATACAACAAGTTCGACAAGAGGAGTTGCCTATTGTGACTCTGGAGCAAGATCTGAAAAAGCTGCAGAATGAGTTAAAGAGATTTAGCAATCAGCTCAGCAACAAAAAGAAGGATGGTTTCCGCTATTCTATGGATTTCATCCTGAAGGCAATTAGCTATCTGTTAAGACCCAATGATAAGTTGAAAGGCTTCCTAGATGAATGCAAAGAGTATTGTTTGAACCAGGCAATCAACAGCAATGAGTTGAAGGTTCTTCGCAAGCTAAAGAAGAATGGTGAATGGATTGATTTACACTGTATCTTAATTCATCTCCATGGAAAGGTGCACAGCGAGCGTCCCATTCCACAAATGGAGACCGAGAGAAGAGCCATGAAGCTTATCAGGCTTCTTGTGGAAACGTATTTGAAGGGAGGCGGTGGAGACGACTGGAGGTTTTGTTTATTAGCAGCGTCGATACTGTCTGATATTGCGAGGAACTGCGCGAAAAAAGAAATGAGGCAGGAGGCAAGTGACTGTTTGGTGATAGCCCTTAAAGATGCAAAAGTACAGAAAAGACCAGAGTGTAGAGCATGCCTTGAGCGCCGATCTTCAGAAGTGCTGTTCTGTCCTGACAGAGTAACCAAGACGTCTTCAGTGGTTAATGTTCTGTACAAGAACCAACATTTACAGCACGAACTTCCGGTAGATCTCCACATTGAACACCTGTCCTCCACGTACAAAAATCAGACGCTGGAAATCAACAAGACGACTATTAGCAAAAGCTTAAGCTGCTTTGTCAACCATGGGATGTTTCAGAGAAAGAAAGTGGCCGTGAAAGTCCTGTTGGTCAAAAAGGAACATCTTTTGAAAGAGGATCCAATCTTCCACGCCAGAGAACGACTGATCAGAGAAGCCGACAACATGATACAATTAAACCAATCTCATCACCCAAACATTCCTGTTCTCCTCGGCTACGACACTAAATACTTGCCATACCATCTTATCACACCATTTGAAAGATGGGGGGATCTGTTGCAGTTTGTTCGTTCGTCCCGCGAAGAAAGTCCTCATCTCCAACCAATCCAACTTCTTAAGATGCTGATCGGCATCGCTGATGCTCTATTGTACTTAGAAAAAAAAAGTTCGGTACACCGCGCTGTCATGGCAACAAATGTCCTTGTGGGAGACAATTATGTCTGCAAGTTAGGTGGCATGCATTCCCTACAGCCGCTTACGAACCAGACTGAAAATTCTGATTTTTCGGTGTATAGCCATTGCTCAGCTGATGATGGTAGTCCAGAATTTATCAGCATAACAAATGACGAGGAACTACCTGTGAGATGGAAAGCACCAGAGTGTATATTGGAACATCGTTATTCCACTGCCTCTGACGTGTGGGCCTTTGGGGTGCTTATGTACGAGGTGCTTACCCATGGGTGTCTACCTTACAGACACGTCTTGAACGATGACGAGGTGGTTAAGTGTGTTACGAATACGGACGGGAAAAAGGCCTTGCCTTTTGAGCCGTGTTTTGAAAAGAAGGAATATGAGCTGATGATGCAGTGCTGTGAATTTCATCGATATACAAGACTCAAATTATGTGAAGTTAAAGCAAAGCTTAGAGAAATGCATACAAATGCAGACGAAGAGCAATCACGGCCTGACCCACCACCCCTGGATAGGCACGTCACTTACGAAAGTTCTGACCTTGGAAATTCGGAGGATATATACAGCTATATTCCAGCGGACACTTACGACGATGTACGTAACTCGCAGTCCATCGAGGAGGAGCAAGGCATTTACGATGTAGGTAGCCAGCAGTCCATCCAGGAGGACCAAGACACGTTATGCGGTAAAGCGTTTAACAGTGAATGGAGCGAGGTGATGATGGAGATGAAGCAGGAAGATTTTGCCAATACATTGATCATGCCCAACCGTGGTGATCGTCCAAGAAGACAAATGGTCCAGGGTGTGTCCATGGTAAGAGAAACGATAAAAAGAGGAGATGTTCATCATCTAAGAAGACTTCTTGAACTTGATCATCCAAATCTTGTCTCCATCTCGAAAATTCACAATTTGGATTCGCATTGCCCAAACTGTGGAAGTGGTAAAAAATACGTTCTTGAAAGGCGATGCCAGATTGGGGACATAGTCACGTACCTGTCCCAAGTGGCCTCTGCACTACATTATCTTCATGTAAACCACGTTGTGCATGGAGACCTCAGGGCTAAATATGTGAATGTGCTAGCGCCAGACAAGGTACAAGTTGGCCATCTGGGTCGCTCCAAGCCTCTCTCTATGATCGATGGTGAAGTTAACAGTGCTTCATGCGTGGTGGAGGCTACCATGCCAACCGATTCTATTCGCTGGTGA

Transcript

OS493_008654-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07714	PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	Domain	Interproscan
PF10275	Peptidase_C65	Peptidase C65 Otubain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000719	Domain	Protein kinase domain	Interproscan
IPR001245	Domain	Serine-threonine/tyrosine-protein kinase, catalytic domain	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR019400	Family	Peptidase C65, otubain	Interproscan
IPR038765	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR050198	Family	Non-receptor tyrosine kinases involved in cell signaling	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24418	TYROSINE-PROTEIN KINASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004672	Molecular Function	protein kinase activity	Interproscan
GO:0004713	Molecular Function	protein tyrosine kinase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_008654-T1 global RNA-seq network