Detailed information of OS493_008586-T1 in Lophelia pertusa

Genomic Location: scaffold_20:1533690...1545036
NR annotation: KAJ7386457.1, pre-rRNA processing and 40S ribosomal subunit assembly [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P54731FAS-associated factor 1 OS=Mus musculus OX=10090 GN=Faf1 PE=1 SV=2
Q9UNN5FAS-associated factor 1 OS=Homo sapiens OX=9606 GN=FAF1 PE=1 SV=2
Q924K2FAS-associated factor 1 OS=Rattus norvegicus OX=10116 GN=Faf1 PE=1 SV=1
 Gene family
Gene familySubfamily
Ubiquitin FamilyULD|UFD|UBX

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00789UBXUBX domainDomainInterproscan
PF21021FAF1Fas-associated factor 1DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001012DomainUBX domainInterproscan
IPR029071Homologous_superfamilyUbiquitin-like domain superfamilyInterproscan
IPR050730FamilyUBX domain-containing proteinInterproscan
IPR036249Homologous_superfamilyThioredoxin-like superfamilyInterproscan
IPR033043DomainFAS-associated factor 1-like, UBX domainInterproscan
IPR006577DomainUASInterproscan
IPR049483DomainFas-associated factor 1/2-like, UAS domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23322FAS-ASSOCIATED PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005783Cellular Componentendoplasmic reticulumInterproscan
GO:0030433Biological Processobsolete ubiquitin-dependent ERAD pathwayInterproscan
GO:0043130Molecular Functionubiquitin bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K20703FAF1; FAS-associated factor 1-Toll and Imd signaling pathwayko04624deepkoala

Expression pattern
 Expression trend for OS493_008586-T1 global co-expression network
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