Detailed information of OS493_007448-T1 in Lophelia pertusa

Genomic Location: scaffold_16:2524913...2553821
NR annotation: KAJ7374359.1, hypothetical protein OS493_007448 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q92797Symplekin OS=Homo sapiens OX=9606 GN=SYMPK PE=1 SV=2
Q80X82Symplekin OS=Mus musculus OX=10090 GN=Sympk PE=1 SV=2
Q7ZYV9Symplekin OS=Xenopus laevis OX=8355 GN=sympk PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF11935SYMPK_PTA1_NSymplekin/PTA1 N-terminalRepeatInterproscan
PF12295Symplekin_CSymplekin tight junction protein C terminalFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR016024Homologous_superfamilyArmadillo-type foldInterproscan
IPR011989Homologous_superfamilyArmadillo-like helicalInterproscan
IPR021850FamilySymplekin/Pta1Interproscan
IPR032460DomainSymplekin/Pta1, N-terminalInterproscan
IPR022075DomainSymplekin C-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15245SYMPLEKIN-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005847Cellular ComponentmRNA cleavage and polyadenylation specificity factor complexInterproscan
GO:0006378Biological Processobsolete mRNA polyadenylationInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K06100SYMPK; symplekin-Messenger RNA biogenesisko03019deepkoala

Expression pattern
 Expression trend for OS493_007448-T1 global co-expression network
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