Detailed information of OS493_007267-T1 in Lophelia pertusa

Genomic Location: scaffold_16:147907...159931
NR annotation: KAJ7374194.1, 26S proteasome regulatory subunit 4 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P4860126S proteasome regulatory subunit 4 OS=Drosophila melanogaster OX=7227 GN=Rpt2 PE=1 SV=2
P6219126S proteasome regulatory subunit 4 OS=Homo sapiens OX=9606 GN=PSMC1 PE=1 SV=1
P6219226S proteasome regulatory subunit 4 OS=Mus musculus OX=10090 GN=Psmc1 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF16450Prot_ATP_ID_OB_CProteasomal ATPase OB C-terminal domainDomainInterproscan
PF00004AAAATPase family associated with various cellular activities (AAA)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR012340Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR050221Family26S Proteasome Regulatory ATPaseInterproscan
IPR032501DomainProteasomal ATPase, second OB domainInterproscan
IPR003593DomainAAA+ ATPase domainInterproscan
IPR003960Conserved_siteATPase, AAA-type, conserved siteInterproscan
IPR003959DomainATPase, AAA-type, coreInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR2307326S PROTEASOME REGULATORY SUBUNITInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0008540Cellular Componentproteasome regulatory particle, base subcomplexInterproscan
GO:0036402Molecular Functionproteasome-activating activityInterproscan
GO:0043161Biological Processproteasome-mediated ubiquitin-dependent protein catabolic processInterproscan
GO:0016887Molecular FunctionATP hydrolysis activityInterproscan
GO:0005524Molecular FunctionATP bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K03062PSMC1, RPT2; 26S proteasome regulatory subunit T2-Proteasomeko03051deepkoala

Expression pattern
 Expression trend for OS493_007267-T1 global co-expression network
TOP