Detailed information of OS493_007232-T1 in Lophelia pertusa

Genomic Location: scaffold_15:3622490...3640020
NR annotation: KAJ7380842.1, hypothetical protein OS493_007232 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q66J69E3 ubiquitin-protein ligase RING2-A OS=Xenopus laevis OX=8355 GN=rnf2-a PE=2 SV=1
Q803I4E3 ubiquitin-protein ligase RING2 OS=Danio rerio OX=7955 GN=rnf2 PE=2 SV=1
Q5R9J5E3 ubiquitin-protein ligase RING2 OS=Pongo abelii OX=9601 GN=RNF2 PE=2 SV=1
 Gene family
Gene familySubfamily
Ubiquitin FamilyULD|UFD|RAWUL
Ubiquitin FamilyE3|E3 activity RING|RING

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13923zf-C3HC4_2Zinc finger, C3HC4 type (RING finger)DomainInterproscan
PF16207RAWULRAWUL domain RING finger- and WD40-associated ubiquitin-likeDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR042741DomainRING1 , RING finger, HC subclassInterproscan
IPR001841DomainZinc finger, RING-typeInterproscan
IPR043540FamilyE3 ubiquitin-protein ligase RING1/RING2Interproscan
IPR032443DomainRAWUL domainInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR017907Conserved_siteZinc finger, RING-type, conserved siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46076E3 UBIQUITIN-PROTEIN LIGASE RING1 / RING 2 FAMILY MEMBERInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000151Cellular Componentubiquitin ligase complexInterproscan
GO:0003682Molecular Functionchromatin bindingInterproscan
GO:0031519Cellular ComponentPcG protein complexInterproscan
GO:0061630Molecular Functionubiquitin protein ligase activityInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K10695RNF1_2; E3 ubiquitin-protein ligase RNF1/2EC:2.3.2.27
Chromosome and associated proteinsko03036deepkoala

Expression pattern
 Expression trend for OS493_007232-T1 global co-expression network
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