Gene detail

Detailed information of OS493_007130-T1 in Lophelia pertusa

Genomic Location: scaffold_15:1792469...1797759
NR annotation: KAJ7380754.1, F-box/LRR-repeat protein 12 [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

OS493_007130-T1

ATGGCAGTATTTTTAGACGAAATTCTACTTCATATATTTGGATATGTCGATGCACCAGCACTGACGAAAGCCTCGTCGGTTTGTAGGCAATGGAGAAACATCGCTAAAACTCCATCGCTTTGGCGAAAGCTCGTGCTGTTGCGATGGCCGTCGCAGAAGTTTTTGTACGAAAAAGTGTCTTTATCATGTGTCAACTGGATGAATACTTATCAAGATTTGTCTCTCAGAGGCAACTTTACTGCCGATTACATGAAATATTTTATTTCGTGCTGTGTAAGCGGCGACGAATTGACCGAAATTGAATTGCGTGAAAGTATGTTTTTGCACATGGCGGGAACAATGATGAAGTGGGTTTTGCCGGATGTATTTGACCAAGAGGACGAGTTCAACACGTCGGGTTTCAACAAGAACTTTGAATTATTATTTGACACGTACGATCTAAAGTGGACATTCATTGACAAGAGACGTGGATACAATGATGACTGGTTCAGTGGCAAGATGAAAAAAACGACGAAACCAGCGCGCTATATCCGACCATATCAAGTTATCCCAAGCTGTGTGGTCATGTTTCGCTGGCTTTGTCTCTTTCGCGCCTATGTGACAGACGAGACCGGGTTGACTTTTTATCGCATATGGCGGTATCGCCTCAAGCACAGGGATACGGGGATGACTTTTGAAGTATTCGACTGGAAAGCGGCCATGTCGTGCACCTTGTCAAATGGTAGCCCAACATCAGCTTCTTTCAGAGAAGATGCATTGGAGCTTCTCAGCCTCCTCACCCACCCACACTTTCTCATGCACCCTATGGGGGTGAGTGCATTCAAGGAGCTGTACCTTTCCCCCCCTAAACGTCTCAGTAGTAGGTGTAACTCTGCGACGTCATCACTTTCAAGCTGTGGGTTGACAAGCCCAAGATCGCCAATAAGAAATATTGGTAATTTTTCTTTTGAACGAAAAGACACCAAAACAAGACGCAGGATTGCCAGTAGCACCACTGACAGTGATGACGAATCCGAAGGAGGCTGCGACACTGGTTACATCAGTAACTGCGAATACTTTATCAGTAGCAACCATTGGGATATTGAAGAGCAGCACAAAATCCAAGCAGAAGTGGCTGGGATGTGGACGGTCATCAACAACAATGACGTCCCCCACCTCTTTGTAAACTATGATGTAAACAACAATTCATGGATATTCCATGATTGTATACCAACTTTCCCTGAGTTGTGGGTGCAGGGGGGTGCGGCATTTGACGCAAACTATGACTCACTGAGGGGCCATGGTTTTGGCATAGAACCCATTCCAAGCTGCCTTGCTCTGTACCGCTTGGTTTGCCTCATGAATATAAATGCGCGAGTCTATGTTAGCATGGAAGACGCATCAATTTGGGCATTGCACTTGATCCATAACACAACCAGAGCAGTACTACATCTCAAGGATTTGAATGGTTGGTTTGATGCTTCAGTTAGTTTAACAGAAGATATGCAAAACCAGTTGAGAGAAGCCTCTGACAGGAGCACAGAGTTGGAGACAGTGCAGTGGTGTGATCTCTCCACCCCTGTACCAGCTGCTGACAACATCAGCGAGTACATCGCCAGTGACGAAGACAGCGACGCAGGCAACAAGGAAGTTGAGGATTTCTATTGTATGACTCCGACCCAGTCTGATGAAGAATGTGACAGTGGCTCAACAAGCAGCGAACTGGATTCTGACGACCTTGAAGATCAATTGTGGTTTACGTCGATAGCCCCACAGTTTATGGGAGAGGATGATGCTCTGTTTCCGTACAGTGATGCTGGCGTTCCAGAGGGTCAATTCGCGCAGAGCTCAAATAGCTTTTGGCGACCACTGGATGTACATGTACCTGTTTATCAAGCTTTGTCAGGACACTCTGATGTAGAAAATCAGGGGGGTGCATGGGAAATGAGTCTAACCACAGAAAACTGTGATGATTATCAGAGTGGAGGGGCTTTGGATGACGCCCAAGGGTTCGGATACCACTCCTCTGACGGCAACAAGAACAATCAACAGTACAACAGCCATTATTCAGACAGCGAAGGAAGTGAAGTACATAGCAGTGAGTCTGGTCCAGTGAGCACCCTTAAACAATTCAAGCATGATGTCACAGTATTGTTGAACTTACTGATGGATGAGAAGTTTTCTCATCCATATGGAACAATAGCTGGTGCTGTAGCGTAA

Transcript

OS493_007130-T1

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|F-box

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12937	F-box-like	F-box-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001810	Domain	F-box domain	Interproscan
IPR036047	Homologous_superfamily	F-box-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
-	-	-

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12118	CRY1; cryptochrome 1	-	Circadian rhythm - plant	ko04712	deepkoala

Expression pattern

Expression trend for OS493_007130-T1 global co-expression network