Detailed information of OS493_006864-T1 in Lophelia pertusa

Genomic Location: scaffold_14:3237289...3250777
NR annotation: KAJ7386834.1, WD repeat, SAM and U-box domain-containing protein 1 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
A0AUS0WD repeat, SAM and U-box domain-containing protein 1 OS=Danio rerio OX=7955 GN=wdsub1 PE=2 SV=1
Q8N9V3WD repeat, SAM and U-box domain-containing protein 1 OS=Homo sapiens OX=9606 GN=WDSUB1 PE=1 SV=4
Q5FVN8WD repeat, SAM and U-box domain-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Wdsub1 PE=2 SV=1
 Gene family
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyE3|E3 adaptor Cullin RING|CDC20
Ubiquitin FamilyE3|E3 activity RING|U-box
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DWD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04564U-boxU-box domainDomainInterproscan
PF00400WD40WD domain, G-beta repeatRepeatInterproscan
PF07647SAM_2SAM domain (Sterile alpha motif)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR020472RepeatG-protein beta WD-40 repeatInterproscan
IPR001680RepeatWD40 repeatInterproscan
IPR003613DomainU-box domainInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR013761Homologous_superfamilySterile alpha motif/pointed domain superfamilyInterproscan
IPR001660DomainSterile alpha motif domainInterproscan
IPR052085FamilyWD repeat, SAM and U-box domain-containingInterproscan
IPR019775Conserved_siteWD40 repeat, conserved siteInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46573WD REPEAT, SAM AND U-BOX DOMAIN-CONTAINING PROTEIN 1Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0004842Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0016567Biological Processprotein ubiquitinationInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K24764WDSUB1; WD repeat, SAM and U-box domain-containing protein 1-Domain-containing proteins not elsewhere classifiedko04990deepkoala

Expression pattern
 Expression trend for OS493_006864-T1 global co-expression network
TOP