Gene detail

Detailed information of OS493_006358-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_006358-T1	LATROPHILIN RECEPTOR-LIKE PROTEIN A	scaffold_13	2454577	2474718	-

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_006358-T1

ATGCTACACTGGTCCATTTATCTCAGTATTTTACAGCTATGGATTGTTTCTCTGTTAAACGTTTCGTCAGGAAAAGATTGTCGCATGTTGAAACTAAAACCTGCCCAGAAAGGAAACTCTATACAGGGTCATGTGATCAGAAGTGTGATGGTAAAAAGAGACAGCTCGTGTCTGGCTCGCTGCTTTACAGAAGACAATTGTATGTCGTATAATCTTGGTCCTAAGCTTGTAGACGAAAGTCACACGTGTGAACTCAGCAATTCCGATCACCTGGTGCATCCTGAAGATCTAGCGAGTCGTGAAGGATTTATTTACCAACCATTCGAGAACGCTTGTCACAGCAGTCCGCCACGGTGTATCGCTAACTCATCAGTTTGTCAAAATGGATTCACAGACAAGGGATATCGCTGTATGGAAGGTCTTCTTCCTTTTGTTACCATGACACCTCAGACGGAAATTACTGAAACCGGACGTCACGTGAAATTCACGTGCAAGGTCACTGGGCAATATAATCCTGTAGTCACATGGAGCAAATCTCAAGGAAGTCTTCCTGACTCAAGAAGCATCGTAAATGAAGAAACTCTGACCTTACTGAACGTCACTACAGATGACAGCGGTTCATATGTGTGCACTGGTACAAGCATTATGGGTACCAACTCATCATCTGTCACGCTTCGAGTCCACACTGCTCTCAAGTTCATTACCAGGCCCCCATCCTCTGTGCTTGTGTACGATGGTCAAGCATTGAACCTGTCATGTTCTGCTTCAAGTGATCTACAGACAAACGTTTCGTGGATGTTCGATGGAACCACGATACTGCCTCAAGGCGCGGCTATTGATGCATCGGATAACTTGATCGTTTTGTTTGCTAGTTTCACTCATGGCGGTAACTACACTTGCACTGCTATGAACTCACTAACGGTGCTCCACGCGAATGTCAACGTTCATGTGATCCCTGAAACCTGCAGCAGAGTGAAAGTAAACATCGCTGACGTCAGTGATACCCAGTCTCCGCCGACCTTGATGCCTCCAACTCTACCTCTTGGTGGTCTACAACCTCCAGGAGCACCACCGCCTTCGTCAACTGATGGTCAACCCCCCTTCCCTCCATCATCGTCATCGTCCTCTGTTGGGCAGCCTCCACCTCTACCACCTGAATCGTCCCCACCAGCTCCTCCTTCTCATGTATCCCCACCTTCTCTACCATCTCAATCGCCCCCGCCATATCCACCACCTCCGTGGTCCACTGCACCATCTCAATCGCCCCCGCCATATCCACTACCTCCGTGGTCCACTGCACCATCTCAATCGCCCCCGCCATATCCACCACCTCCGTGGTCCACTACACGATCTCAATCGCCCCCGCCATATCCACCACCTCCGTGGTCCACTGCACCATCTCAATCGCCCCCGCCATATCCACCACCTCCGTGGTCCCCTGCACCATCTCCTCCTTCTGACACATCTCCACCATCTCACACATCACAACCATCTCCACCTTCAGGCAGCGGAGTAGTCCTAACTGGAAAACCCCCAACAACCACTGCAACAGCTGCATCCACAACTGTACCTTCCCCTACTGGACCTGCTCCTGATTCTTTTCTTCTTAGTACTTTGCGCCGCAAGTGCAGTCCAGATGTGATTCCAACCGATGGTACGACAATGCAGAAAACGTGTTATAATCCTCAGACCAGCGCTCTGAGTTTGAACAAAACTTGCTTTGCGCTAAAAAACGGAGTAACTAGGGCAAAGTACACTGGTTACGCAGTTTGGAGCGCGTGCCCGCAGAACTGGACAGAAAGAAGCGTGCGACAAAAATGTCAAGATGAAGATCAAAATGACCTTTTAAGGAACTTGCCAGTATTCAACAAAGATAGTCACGTGACGTACAAAAATATATTCTGCGCCAGATGCAATGGTGCTGTAAATACGTCATACTGGAAGATTAAATTCGACTGCGAGACTTGGTTTAACGTAACAACTTTGAATTTAGGCGATAGAATGACGCTTTTGCTTCAGAATTGCTCGGTTAATAAATCACCACAGGATACCCAGCTTAAATTTTTAAAACGATGCATTCCTCGGTTTCAGGACTGCAGCAATACCAGCCAAGAGAAAAACGAATCTTACTGCCAAAGAGAATGCCTGAGGTACGCTTTTCCATTCTGCTTTGGTACAGTCGAAAAGATACGATTTAGAAATCCACAGTGTGCGTTGTGCAATGGTTTTAAACCAAATGATCTCGAAAGTGAATGTGAAGCTGATAGTGGTGGAGTATCACCTCCTCTCACTATCCTCTTTGATTTTAGTTCCACATCAAAGTACAGTGTTGTAGTAAAAGACAGAAAAGAGAATGTGGTTAAACGAACTAAACAAGAGTTGTCTTGTGCCCTTGACGAGGTATATGATCCTTACGAAGGGAGCTGCAAAACGATCGACTCAACCGGATCACAAACAGCTGGTCACGAGAAGAGCAAAGGTAACGAAACCGAGGCAAATCAAGGAAACAGAACAAGATTGCAGCCAAATTGTACATTCATTGCGTTTAATAAAACAGATTACGTGCAGCTTTCTAACAGCTCCGTCTACTTGAAACTTCACAACAAAATATACAGCAATACTACATACACGATACGTGACAACAGATTACTCCTGTGCGTGAATTTTTCAAGAAATTTCACTGCAACAAAAACAGAACCCGGCATCCAGCATCAGATCACTAAAACTCCAGCCTCTCTGCAGCTTCTTACGTCAATCGGTTGTATAGTGTCGATGGTTTCTCTTGTTCTACTGCTGATTACGTATATCTTGTTTGCTGAACTCCGTAACTTGCCTGGGAAGATCATAATAAACTTGACTTTTTCTCTGTTGCTGTACCAAAGTGTGTTCTTTTCAGCGGCCAAAACCGACGATCAAGAAACATGCCTGGCAGTCGCCGTTCTTCTTCATTACTTTGTCCTCTCCTCCTTTACGTGGATGAACGTTATGGCTTATGATGTGCATCGGATTTTTACTACCACAGCAGTTGCGGCAAATCGACAAGGAAGCTACAAGAAACGTCTCATGAAGTATTGCCTGTATGCCTGGGGAGCTCCTGCCTTTGTCGTCCTCATCTGCGTTACAGTTGATCATATCAAAAAGGAATATATTGGATATGGGCAAGGAGAAGAGGAATGTTTCATATCTCAGCCTCAAGCCATTCTTTATTCGTTTGTTCTGCCCGTTGCACTGCTTATGATTTTCAATCTGTTTGCGTTGGGACACACTGTGATTCATATCGTCAACACTCGAAAGAGAACCCAACAAGTAACCAATCAGCGACATAGCACCAACGTGACTCTTATTTGTGTTAAGATGTCTTCAGTGATGGGCGTTACATGGATTCTCGGGATTTCTGCAAACGTCAAGGCTTTGTCATTCTTGTGGTACCCGTATGTGATTTTAAACAGTCTTCAAGGCTTCTTTATTTTCCTGTCATTTGCTGTTAGTGGAAGAGCTCTAGAGTTGTACAGGAGTAAATTGACAGCTGGCATCCTAAAGAATCTAACAACAAAGACTGGCAGGAACTGTCGCGTACAGTCCGCTTGCAGTACAGAATGTCCTGATACTCAAGATACACGTCTATGA

Transcript

OS493_006358-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00002	7tm_2	7 transmembrane receptor (Secretin family)	Family	Interproscan
PF00024	PAN_1	PAN domain	Domain	Interproscan
PF07679	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000832	Family	GPCR, family 2, secretin-like	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR003609	Domain	PAN/Apple domain	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR013098	Domain	Immunoglobulin I-set	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR017981	Domain	GPCR, family 2-like, 7TM	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR053231	Family	G-protein coupled receptor LN-TM7	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45902	LATROPHILIN RECEPTOR-LIKE PROTEIN A	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004888	Molecular Function	transmembrane signaling receptor activity	Interproscan
GO:0004930	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007166	Biological Process	cell surface receptor signaling pathway	Interproscan
GO:0007186	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_006358-T1 global RNA-seq network