Detailed information of OS493_006219-T1 in Lophelia pertusa

Genomic Location: scaffold_13:1162667...1174238
NR annotation: KAJ7393250.1, hypothetical protein OS493_006219 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
A7TNS8CCR4-associated factor 4 homolog OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) OX=436907 GN=CAF4 PE=3 SV=1
Q9SYX2Protein SUPPRESSOR OF PHYA-105 1 OS=Arabidopsis thaliana OX=3702 GN=SPA1 PE=1 SV=1
A6ZZZ8CCR4-associated factor 4 OS=Saccharomyces cerevisiae (strain YJM789) OX=307796 GN=CAF4 PE=3 SV=2
 Gene family
Gene familySubfamily
Ubiquitin FamilyE3|E3 adaptor Cullin RING|CDC20
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DWD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00400WD40WD domain, G-beta repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR020472RepeatG-protein beta WD-40 repeatInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR001680RepeatWD40 repeatInterproscan
IPR019775Conserved_siteWD40 repeat, conserved siteInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22847WD40 REPEAT PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan

Expression pattern
 Expression trend for OS493_006219-T1 global co-expression network
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