Gene detail

Detailed information of OS493_006186-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_006186-T1	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	scaffold_13	817734	833612	+

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_006186-T1

ATGGCGCGTCGAACAACAAATCGAAAACATCAGGTAACTGTTCTAAAGCAAGCTTGGGAATGGGCGGATTACACGGAGCCTGAAAATATCACTAAAGAAAATGTAGAGAGTGCCTACCTAGTAACTGCGACTGGTTGTTCTCAGGGAACCTGTAGGAGGAACTGTAAAGCTAATCCTAATTGCTTCAATTGCCTTGGAGAAAAATTTTGGCTTGGTGAAATAAAAGAAGATTACTGGTTGGATTGTGAAGATCCAGAAAATGAAAGGAGAACTGAGAATGCTTTTGTTGGTCTTAAGAACCTTGGAGCCACTTGCTATGTGAATACGTTTCTGCAGGTCTGGTTTCATAACCCAGTGTTTCGCTCAGCCATGTACAAATACATCTCTCCTACATGTACAATTCCTGAATATGAATCTAAACATGAGGATAGCAAATCTGCGAATGGCTTGCCAATGACATCAGAGATTGCTAAAATCGCCACAGATTCCCCTGCACTGACCAACCACAAAAGCGAGAATGGCGGAGCCTTGGATAAACCCTCTACTGTTGCCACACCACCGGATAAAGCGTCAGCTGCCCAGCAGGTTCCATTACTTCCTTCTACCACTGTGCTGAGCTCCGAGGAAGCACCGATGACAGTCTGTGGTCACCTCCAGTTGGTTTTTGCTCAGTTGCAATACAGTTTTCGAAGGTACATCGATCCCAGCCCATTTGTTGACAGTTTAGGACTGGACACTGCACAACAGCAGGATGCACAGGAGTTTAGCAAACTTTTTACCTCTTTGCTAGAAGAAACTTTCTCAAAACAGGATGAACCTGAGGTGCAGAACATTGTGCAGTCTCAGTTTGGTGGAGAATACTTCTATGTCACAGAATGTCACAGCTGTGGGAACAAGTCAAAGAGGTTATCTCGGTTTTATGAACTGGATCTGAACATACAAGGACACTCGTCACTTAATCAGTGCATCAAGGAGTTTCTAAAGGAAGAAAAGTTAGATGGTGATAATCAGTACTATTGCACTCAGTGTAACAGCAAACAGAATGCCGCTCGCTACATTGAACTGCATTCCCTGCCGCCAGTCCTCAACCTGCAACTGTTACGATTTGTGTTTGACAGGAAAACAGGGTACAAGAAGAAACTGAATTCCTTCATTCAGTTTCCAGACATTCTTGATATGAAGGACCATGTGAAAAATGGATGCATTGGATCTGAGTCAGTTTACGAGTTGAGTGCAGTGTTGATCCACTTTGGAGTGAGTGCTTATTCAGGACACTATGTGGCTCACATCAGGGATAAAAAGTCTGGCTCATGGTACAAGTTTAATGATGAAGATATCGTCAAGATGCAAGGAAAGTTAAAACTATCTCAGGATGAAGATACAGCAGACACTAGCAGCAAGCCGACCAAAAGACCCAAATGTGCAAAAGGCTATCACGTATCCAAGAATGCTTACACATTGGTGTATACCCTCCAAGGACATAAGGGTGTTGGGAGTGAAGATGACGATGTCGAAGTTCCTCCTCATGTACTAGAGTTGGTGGCGACAGACAATAGTCGGTTTGAACACTGGGTTACACAGGTCAAAGCATTTAGGGAAAAGTTGATCGGCAAAGGGAAGGCAAGGCAAGCTGAAATAAAGAAACTTTATCTAGAAATGCCAGTTACTTCAGAAACAGAATATGAATGGATTTCTACAAAATGGCTGAAAGATTGGATGAACGAAAAGACTGACACGCCACCAGTGGACAATTCCTCTCTGCTGTGTTCTCATGGAAAACTCAATCCAAGTCAAGTTGTCAATGCTAAGAGAATCAACATCAAAACTGCTGATGAAATATTCAGAAAATACGGTGGACTGCCAAGACTTCAAAGTGACTCTATGTGTATCAACTGTGTTAAAGAACAGTGCAGAAGAATACGATTTGAAAGCCGACTGGCTGAAGATTACAAGTTTGTGTCAGATACTCTGAAGCAGTCTCAAACATCAAACAGTGAAAAGTTATTTTGGGTCGGTCGACGGTCGCTTCTTAGATGGAAAGCCTTGGCAAACTACCACGAAGAGATGCGACAGAGTTTGATGGACAGCTGTCAAGTTACAGCCAATCACGACACAGAGGACGAAGACGACGCCAATGCCAGGGGAATTGAAAATAATGATGCTAGCATGAAGGAACAGGAGAACGCGCCACAACAGCTGGACAAGAATCTGCAGGAGGCTGCTGAGGAAGACGAGGATGACAGTGATTCAAAGTTCAACGAAGACTTACTTTGCGAGCATGGAGAACTGTCCTCGGAAGAATCATGTCGGCGGCTTGTACCAGATGTCGTGTGGCAGAGGCTCAAGTATTATTTTCCTGCCGCACCCGAGTGTCCAGCTCCTCATCCAGTGTGCAGATCATGTCAGGCGGAAGACGAAGAAGAACGACAGAAGAGCGAGGTTTACAAATTACTAGCATCAGAGCAGAGAGCTGCCGTTAGTCATCTCTATCTCGACAGGAATCGACCGTCCTTTGATAACAACGACCCGTTTGTTGCCTGTGCCATTTCAAAAGATTTTGTCGATCATTGGAGGCAGTTCTTAAGGTACCCCGTAAGGAATGTCCCACCGAAGACCATCATTAATGCACCTCTGCTGTGTCCCCATGAAAAGTTCCTCTTCAATCCCGAGTGCGATGAGGACATGGATGGTGCGAGCCAACACGTCACAAAAAATGTAACAGAAGACGATGCGAGGGAACTGGTGACTAGCCCTGAAGTGTGCACAGAATGCTGCCATGCGCGGATACAAGAACGAGCTCAGCACGTGGAAAATTACCGCTTTGGTACTATCTACGTGCGGAAAATCACAAAGGACCACAGCGAGAAGGACATACAACAAGCCATGAATGATAGTACCTCGAGCAAAGAAGGAGATTATTTCGACCCAGACTTCCAGACTCCGCCGGACAGCACCGTAAACAGCGCGGAGAATCTCGCTGACTGTTGGATCAACCGAGACTTTAAGAGATGTGAAACTACAGCTGATGAAGAGTTTTTCGGTGATGCCGATGGATCAGCATCTCACTTTGAATGGCGTCACACTCTCCAACAATGA

Transcript

OS493_006186-T1

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	DUB\|USP\|USP

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00443	UCH	Ubiquitin carboxyl-terminal hydrolase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001394	Domain	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR018200	Conserved_site	Ubiquitin specific protease, conserved site	Interproscan
IPR028889	Domain	Ubiquitin specific protease domain	Interproscan
IPR033841	Domain	Ubiquitin-specific peptidase 48	Interproscan
IPR035927	Homologous_superfamily	DUSP-like superfamily	Interproscan
IPR038765	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR050164	Family	Ubiquitin carboxyl-terminal hydrolases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24006	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004843	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0016579	Biological Process	protein deubiquitination	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_006186-T1 global RNA-seq network