Gene detail

Detailed information of OS493_006172-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_006172-T1	COLLAGEN ALPHA	scaffold_13	707535	714268	-

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_006172-T1

ATGCCATGGATCTCGTGTTTCGCTCTGGATTCATCCAATGACGTTGCTCTAAACCAGTGGACTCAACAGAAAGAGTTCATGAAGAAGGTTGCCGACGGGTTTAATGTCCAGGAAGGCGGAACTCACGCGGCCGTGGTGGCATATTCCACCATACCTTCGATCAATATGAAACTTGGTGAACGTAACGTTAAAGATGAGGTTGACAAGGCTTTTGATGACCTACCACGTGACCTTGGTAACAGGAATTTGGTCATTCTGTTGGAGATGGCTAAATTTGAGGTGTTCACCAAGTCCAGTGGTATGAGGACCCATATGCCCAAGGCCCTTGTAGTGACGGTCCTTGGACCTCAAAACGACCACAACACCAACGCCGAGAAGAGCCTGAGGTCCTTTGCCAAGCAACTTGAAATAAGTGGCGTAAAGGTCATAGCTGTAGGCAGTCCTAGCATCGCTGAAAAGGACCTGAGGACTATGACAACCGAACCCAAATACGCTGTACGGGTCAACGATTTACAGTCACCAGCCGAAGCCGAGAAAGTTGCCAAAATTATTTGTAATGTGGCTGCAGAGTTCCCATCCACTGGCAAGAATCTATTACCAGCAGCCAAACCCCAACTTCCGTTGGCATCTTTAGTTCCTACCCAGCCCCCTGCCCAGGTTCCTGCCCAGGCCCCAGTGCAGCCTGTCGCAGCCGCACCTAATGTAAATCCAGCGAAAAGATCAGAATACCCGTTCAATTGTAAACCCGTGCTGTACTATGATTTTGACAAGATGTGCGCTGGAGAAATTTTCGACGAATCAGGCTTGGGTAATAACGGGATATCCCGCGGGCAAGTGATTGTTGAACCCGGATACAACGAGGACAATGGTATAGACCTGTCTGACGGGTTTATCCAACTGGATGGAATGAATTTCAAGGGTAAGCCAACTCTGGGTGTTACCATAGCGACGTGGGTCAAGATCAAGAGCGTGACAGGCTCGAATATAAAGGAGATATTCGTGACAGAGGCTCCTGGAATAACCGACCCCACTAAACAGGGCCAGTACCACTTTGAAATCGTGGACAAGGGCAAAGTGCGTTTCTTCCAACGAAACAATAACAAGACCGTGTACGGGCGAACAACCCTGGAAGGAATCCCGGAAAACAAATGGGTTCATCTGGCTGGAGTTTACAATCCTAGCTCCAAACAAGCCACGATCTACATCAATGGGCGCGCCATTAAGGATTATGAACAGACGGAGTCACAACAGACGGAATCTCTGAACACAGACTGGAGCAAGGCTGCTTATATTGGGTCCTTTAAAGACGATCAAGGGCCCCCACGCCAGTTCAAGGGAGCTCTGGACGAGTTCTATATTTTCCCCTGTGCCCTTCAAGACGACCAGATTGTGACCCTCAAGGATACACATAAGATACCCAAGTTTGTAGGCCCGTATCCAGGCGTCAAACGTGACGGTTATTTTGTGGCGCCATACACAGGAACGTACTCGTTTGCGTTGGCTGGCAACGACGAAGCCGAGCTGTTCTTTAGCGGATCGTCACGCGAGAAAGACAAGGATTTGTTTGCTGTGGTCCGACAGACTGGGCACAATAAGTTTTCAGAACATCCGTTCCAACAATCTGGGTACATTCCGTTGGAGGCTGGCAAGTATTACTGGATTGAGGCCCTGCATAAGGAAGGCGCCAGGAGGGACTCTCTATCAGTGGGCTACACCCTGGAGTGCCCCAATGCACCTTCCGTCCTTTCCGAGAAGCCCATCCTCAAACCAAGTCTACAATACAATATTCCACGAAGCTGTGCCGAAGTCAAGAAAATGTGGCCTGGATTCAAGGATGACGAATACGTGATACACATGACTCCTTCATGTAATCCTGTACGCTTGTTCTGCCATGGACTGGACACAGCCACCCCCCGTGAGTACATCACTCTGCCAACTGGCCCCGATAGAAACTACGCCAGTTTCCACAGGGGTAGGCTGCTGGACTTCGAAAGCTGCTCGGGCTCAGTCAACCCTGAACCAAACTGA

Transcript

OS493_006172-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00092	VWA	von Willebrand factor type A domain	Domain	Interproscan
PF07691	PA14	PA14 domain	Domain	Interproscan
PF08685	GON	GON domain	Domain	Interproscan
PF13385	Laminin_G_3	Concanavalin A-like lectin/glucanases superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002035	Domain	von Willebrand factor, type A	Interproscan
IPR006558	Domain	LamG-like jellyroll fold	Interproscan
IPR011658	Domain	PA14 domain	Interproscan
IPR012314	Domain	Peptidase M12B, GON-ADAMTSs	Interproscan
IPR013320	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR036465	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR037524	Domain	PA14/GLEYA domain	Interproscan
IPR050525	Family	Extracellular Matrix Assembly and Organization	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24020	COLLAGEN ALPHA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004222	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0062023	Cellular Component	collagen-containing extracellular matrix	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_006172-T1 global RNA-seq network