Detailed information of OS493_005988-T1 in Lophelia pertusa

Genomic Location: scaffold_12:3263523...3270331
NR annotation: KAJ7339585.1, primary ovarian follicle growth [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q9NX45Spermatogenesis- and oogenesis-specific basic helix-loop-helix-containing protein 2 OS=Homo sapiens OX=9606 GN=SOHLH2 PE=1 SV=2
Q3MHT3Spermatogenesis- and oogenesis-specific basic helix-loop-helix-containing protein 2 OS=Rattus norvegicus OX=10116 GN=Sohlh2 PE=2 SV=1
Q9D489Spermatogenesis- and oogenesis-specific basic helix-loop-helix-containing protein 2 OS=Mus musculus OX=10090 GN=Sohlh2 PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00010HLHHelix-loop-helix DNA-binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011598DomainMyc-type, basic helix-loop-helix (bHLH) domainInterproscan
IPR036638Homologous_superfamilyHelix-loop-helix DNA-binding domain superfamilyInterproscan
IPR039583FamilyTranscription factor-like 5/SOLH1/2Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15402TRANSCRIPTION FACTOR-LIKE 5 PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0046983Molecular Functionprotein dimerization activityInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0003700Molecular FunctionDNA-binding transcription factor activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0007283Biological ProcessspermatogenesisInterproscan

Expression pattern
 Expression trend for OS493_005988-T1 global co-expression network
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