Detailed information of OS493_005678-T1 in Lophelia pertusa

Genomic Location: scaffold_11:3967353...3990188
NR annotation: KAJ7365564.1, TNF receptor-associated factor 3 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q60803TNF receptor-associated factor 3 OS=Mus musculus OX=10090 GN=Traf3 PE=1 SV=2
Q13114TNF receptor-associated factor 3 OS=Homo sapiens OX=9606 GN=TRAF3 PE=1 SV=2
P70191TNF receptor-associated factor 5 OS=Mus musculus OX=10090 GN=Traf5 PE=1 SV=1
 Gene family
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity RING|RING

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02176zf-TRAFTRAF-type zinc fingerFamilyInterproscan
PF21355TRAF-mep_MATHTRAF/meprin, MATH domainDomainInterproscan
PF13445zf-RING_UBOXRING-type zinc-fingerDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002083DomainMATH/TRAF domainInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR008974Homologous_superfamilyTRAF-likeInterproscan
IPR001293DomainZinc finger, TRAF-typeInterproscan
IPR012227FamilyTNF receptor-associated factor TRAF, metazoaInterproscan
IPR001841DomainZinc finger, RING-typeInterproscan
IPR049342DomainTRAF1-6/MEP1A/B-like, MATH domainInterproscan
IPR027370DomainZinc finger, RING-type, eukaryoticInterproscan
IPR017907Conserved_siteZinc finger, RING-type, conserved siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10131TNF RECEPTOR ASSOCIATED FACTORInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0008270Molecular Functionzinc ion bindingInterproscan
GO:0007165Biological Processsignal transductionInterproscan
GO:0042981Biological Processregulation of apoptotic processInterproscan
GO:0033209Biological Processtumor necrosis factor-mediated signaling pathwayInterproscan
GO:0070534Biological Processprotein K63-linked ubiquitinationInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K03174TRAF3; TNF receptor-associated factor 3-Alcoholic liver diseaseko04936deepkoala

Expression pattern
 Expression trend for OS493_005678-T1 global co-expression network
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