Detailed information of OS493_005622-T1 in Lophelia pertusa

Genomic Location: scaffold_11:3257594...3278868
NR annotation: KAJ7365513.1, hypothetical protein OS493_005622 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P25500Poly(A) polymerase alpha OS=Bos taurus OX=9913 GN=PAPOLA PE=1 SV=3
P51003Poly(A) polymerase alpha OS=Homo sapiens OX=9606 GN=PAPOLA PE=1 SV=4
Q61183Poly(A) polymerase alpha OS=Mus musculus OX=10090 GN=Papola PE=1 SV=4

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF20750PAP_NTPasePoly(A) polymerase nucleotidyltransferase domainDomainInterproscan
PF04928PAP_centralPoly(A) polymerase central domainDomainInterproscan
PF04926PAP_RNA-bindPoly(A) polymerase predicted RNA binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR043519Homologous_superfamilyNucleotidyltransferase superfamilyInterproscan
IPR048840DomainPoly(A) polymerase, nucleotidyltransferase domainInterproscan
IPR007012DomainPoly(A) polymerase, central domainInterproscan
IPR007010DomainPoly(A) polymerase, RNA-binding domainInterproscan
IPR014492FamilyPoly(A) polymeraseInterproscan
IPR011068Homologous_superfamilyNucleotidyltransferase, class I-like, C-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10682POLY A POLYMERASEInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0004652Molecular Functionobsolete polynucleotide adenylyltransferase activityInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006378Biological Processobsolete mRNA polyadenylationInterproscan
GO:1990817Molecular Functionpoly(A) RNA polymerase activityInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0016779Molecular Functionnucleotidyltransferase activityInterproscan
GO:0031123Biological ProcessRNA 3'-end processingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K14376PAP; poly(A) polymeraseEC:2.7.7.19
Messenger RNA biogenesisko03019deepkoala

Expression pattern
 Expression trend for OS493_005622-T1 global co-expression network
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