Detailed information of OS493_005365-T1 in Lophelia pertusa

Genomic Location: scaffold_11:708310...720295
NR annotation: KAJ7365266.1, AT-rich interactive domain-containing protein [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
A2CG63AT-rich interactive domain-containing protein 4B OS=Mus musculus OX=10090 GN=Arid4b PE=1 SV=1
Q4LE39AT-rich interactive domain-containing protein 4B OS=Homo sapiens OX=9606 GN=ARID4B PE=1 SV=2
P29374AT-rich interactive domain-containing protein 4A OS=Homo sapiens OX=9606 GN=ARID4A PE=1 SV=3

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF11717Tudor-knotRNA binding activity-knot of a chromodomain FamilyInterproscan
PF01388ARIDARID/BRIGHT DNA binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR025995DomainRNA binding activity-knot of a chromodomainInterproscan
IPR036431Homologous_superfamilyARID DNA-binding domain superfamilyInterproscan
IPR001606DomainARID DNA-binding domainInterproscan
IPR051232FamilyAT-rich Interactive Domain/SWI1 Chromatin RemodelingInterproscan
IPR016197Homologous_superfamilyChromo-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13964RBP-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003677Molecular FunctionDNA bindingInterproscan
GO:0000976Molecular Functiontranscription cis-regulatory region bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan

Expression pattern
 Expression trend for OS493_005365-T1 global co-expression network
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