Detailed information of OS493_005132-T1 in Lophelia pertusa

Genomic Location: scaffold_10:3167159...3173845
NR annotation: KAJ7374782.1, Nucleoporin SEH1 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
A7YY75Nucleoporin SEH1 OS=Bos taurus OX=9913 GN=SEH1L PE=2 SV=1
Q96EE3Nucleoporin SEH1 OS=Homo sapiens OX=9606 GN=SEH1L PE=1 SV=3
Q6TGU2Nucleoporin SEH1 OS=Danio rerio OX=7955 GN=seh1l PE=2 SV=2
 Gene family
Gene familySubfamily
Ubiquitin FamilyE3|E3 adaptor Cullin RING|CDC20
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DWD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00400WD40WD domain, G-beta repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001680RepeatWD40 repeatInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR037363FamilySec13/Seh1 familyInterproscan
IPR020472RepeatG-protein beta WD-40 repeatInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR019775Conserved_siteWD40 repeat, conserved siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11024NUCLEAR PORE COMPLEX PROTEIN SEC13 / SEH1 FAMILY MEMBERInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005198Molecular Functionstructural molecule activityInterproscan
GO:0031080Cellular Componentnuclear pore outer ringInterproscan
GO:0034198Biological Processcellular response to amino acid starvationInterproscan
GO:0035859Cellular ComponentSeh1-associated complexInterproscan
GO:1904263Biological Processpositive regulation of TORC1 signalingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K14299SEH1; nucleoporin SEH1-Membrane traffickingko04131deepkoala

Expression pattern
 Expression trend for OS493_005132-T1 global co-expression network
TOP