Detailed information of OS493_004920-T1 in Lophelia pertusa

Genomic Location: scaffold_10:1032943...1043445
NR annotation: KAJ7374582.1, hypothetical protein OS493_004920 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
A9JTG5RanBP-type and C3HC4-type zinc finger-containing protein 1 OS=Danio rerio OX=7955 GN=rbck1 PE=2 SV=1
E6ZIJ1RanBP-type and C3HC4-type zinc finger-containing protein 1 OS=Dicentrarchus labrax OX=13489 GN=rbck1 PE=3 SV=1
Q9WUB0RanBP-type and C3HC4-type zinc finger-containing protein 1 OS=Mus musculus OX=10090 GN=Rbck1 PE=1 SV=2
 Gene family
Gene familySubfamily
Ubiquitin FamilyUBD|ZnF|NZF
Ubiquitin FamilyULD|UFD/UBQ|UBQ_Other
Ubiquitin FamilyE3|E3 activity|RBR

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00097zf-C3HC4Zinc finger, C3HC4 type (RING finger)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR044066DomainTRIAD supradomainInterproscan
IPR051628FamilyLinear Ubiquitination-Associated E3 LigasesInterproscan
IPR001876DomainZinc finger, RanBP2-typeInterproscan
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR036443Homologous_superfamilyZinc finger, RanBP2-type superfamilyInterproscan
IPR047558DomainHeme-oxidized IRP2 ubiquitin ligase 1, BRcat domainInterproscan
IPR047557DomainHeme-oxidized IRP2 ubiquitin ligase 1, Rcat domainInterproscan
IPR017907Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR029071Homologous_superfamilyUbiquitin-like domain superfamilyInterproscan
IPR047559DomainHeme-oxidized IRP2 ubiquitin ligase 1, modified RING finger, HC subclassInterproscan
IPR018957DomainZinc finger, C3HC4 RING-typeInterproscan
IPR001841DomainZinc finger, RING-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22770UBIQUITIN CONJUGATING ENZYME 7 INTERACTING PROTEIN-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000151Cellular Componentubiquitin ligase complexInterproscan
GO:0004842Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0043130Molecular Functionubiquitin bindingInterproscan
GO:0043161Biological Processproteasome-mediated ubiquitin-dependent protein catabolic processInterproscan
GO:0097039Biological Processprotein linear polyubiquitinationInterproscan
GO:0046872Molecular Functionmetal ion bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K10630RBCK1, HOIL1; RanBP-type and C3HC4-type zinc finger-containing protein 1EC:2.3.2.31
Ubiquitin systemko04121deepkoala

Expression pattern
 Expression trend for OS493_004920-T1 global co-expression network
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