Gene detail

Detailed information of OS493_004452-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_004452-T1	GUANYLATE BINDING PROTEIN	scaffold_9	163650	173517	+

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_004452-T1

ATGGATAAATCCTTGAGACGTTTTCAATCGGAAAATGAAGACGAGGCTTTAGCCAAAGCACTGAATAATTCCCAACAAGAGGATACACCTGATAGCGCAGTCTCGCACCACGATAAAGAGCAGCGTTACGAACCAAGGCAACCATCGCATAGGAATTTGGAATTCCAAAGGCAAAATGAAGATGAAGACGAAGAACTATCGAGAGCTATGGCACTATCTTTAGAAATGCATAAAAATCCACCGAAAATTACATGTGGAGTGAAAGTCACAACCCAGCTTGCACAGATGGCTCATGGAGAGACTGGTGCTTCTGGTAAACGAGAATTAGCCATTCCTCTTTGCTTACCTGACAACTGCAATTGGAATCCACGGACGGGCAGGTCTATTAAAACAGGGGACAAGCGTTCTTCGCTATACGTGGTCCAAGAAGCGCTTGAGCAACTCAGGAAAGTTAAAGGTCCTGTTTGCGTGGTGTCCATTGCTGGTTCATACAGGAAGGGAAAGTCTTACATATTAAGCGAAGCGTTTAATCAACCACAGGTTTTCCCTCTTGGACATGAAATGTTGCCTGAGACAATGGGAATATGGTTATGGATTGTACCTGAAAAATATAAGAATTGCCAAGGCCAGGAATTTACGGTGATTCTACTGGACTCTGAAGGAATTGACTCTGCTATCAGTGAAGGTTTTTATGACCATCAGATCTTCACCTTAACTGTTCTGTTGGCGTCAGTACTAATATACAATTCACAATATGTTGCTGGAAGACATGATATAGAGGGACTGGACTTTATTGCAAAACTCTCACAAAGAATTCAGATTCGATCGAACGCTGGAGCAGTCGGTCATCAGAACGACATGGAATTCTACCACAAAACATTTCCTTACTTCATTTGGCTGCTGAGAGATGTAACTTTAGCCATCCCTAGCGCCTGTAAAGACATCAAGGAGTACTTCTTAAAAAAGGTTTTTAAAGAACAAGATTCCTCAACCAATGGCCATACAAGCAAGCAAGTAGCTGAAATTGATCCTGAGACCATAGCAAGTATAAACCAGAAAAAAGATCAGGTTAATCCTTTGTTCTGGAGCGGTTTAGAGAAGTTCAAAAGCTTAATGAGGACCACTCTATCTCCTAAACGCAGCTTCAATGATGGAGAATTTGTCACTGGCGAAGGTTTGGCGGCATTGGTTCAGGTCTATGTTGACGCGATAAACTCCCCTGATGCTATTCCTAATGTGCAGTGTGCCTGGGACCAATTCGTTGCAGCGAAATGCTCCGACTCCAAACAGGCCGCTCTGCTGACGTATGATGCGATCATTACGTCACAGCTAACCGGTGAATTGCCTTGTGACAATGATGTCATACGTATGAGTCACAACGCTGCTTTTGATTTGTGCGAAGATCAGCTTATGGCGGAAATGGCTGGAATCTCTACCAACACAGTTGAAAGGGTTACGAGCGAGCTTAAGGAGTCCATGGTAAATAAGTTAAACTCGTGGCTAGCTGAGAATGAAAAGTTAACAAGACAATTTTGCAAAGATCTCCTTGGCCGGCTTAAAAGAACCCATTTGGACCCAGTCCTACAGCAACTAAAAGGGAATGGAGCAGCTAAAGTATCTTTTGATGACATCATTGGAGGGTATACACGAATTAAAGACGATTATGACAATTCCGCAAAAGGCGCCAAAGATGCCATTGCTGCCGTGTTCTTTGAGTTTCATCCAGAATTAATGAAGGAAAAAGAGCAGTACCTGGGACTACTCAAACAACTAAAGGATTTTGACGATGATCTAAGCCGAGAATTGGCCGCCAAGGCATATCAAGAGCAAGAGAGAAAAAGGTTGGAGGAACAACAATCACGCTTGCAGGAGGAAAATCGTGAACGGAAGAAAGAGATGGAAGTGTTGCTAAAAAATCTAGACGAGGAACGAAAAAGATTTATTGAGCAAATTGAAAGCGAACGGAAGGCACAACAAGGTCAGATGGATAACATGATAGCAACGAGCATGAAGCAAGCCCAAGGGGTAACGGCAAGCATTCATAAAGGAAAACCAAGCTTTAAAAGACCGCTTCCTGGCAATGCAAGAATACAACGAAGAAAACATGAAAATGATAAAGAAACTGTCTGA

Transcript

OS493_004452-T1

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Alpha-Helix\|UIM

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02263	GBP	Guanylate-binding protein, N-terminal domain	Domain	Interproscan
PF02841	GBP_C	Guanylate-binding protein, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003191	Domain	Guanylate-binding protein/Atlastin, C-terminal	Interproscan
IPR003903	Conserved_site	Ubiquitin interacting motif	Interproscan
IPR015894	Domain	Guanylate-binding protein, N-terminal	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR030386	Domain	GB1/RHD3-type guanine nucleotide-binding (G) domain	Interproscan
IPR036543	Homologous_superfamily	Guanylate-binding protein, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10751	GUANYLATE BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_004452-T1 global RNA-seq network