Detailed information of OS493_004311-T1 in Lophelia pertusa

Genomic Location: scaffold_8:4906798...4923822
NR annotation: KAJ7387324.1, Positively regulates the of the minus-end directed microtubule motor protein dynein [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
A7S338Lissencephaly-1 homolog OS=Nematostella vectensis OX=45351 GN=v1g242515 PE=3 SV=1
C3XVT5Lissencephaly-1 homolog OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_59218 PE=3 SV=1
Q4RJN5Lissencephaly-1 homolog OS=Tetraodon nigroviridis OX=99883 GN=pafah1b1 PE=3 SV=1
 Gene family
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyE3|E3 adaptor Cullin RING|CDC20
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DWD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00400WD40WD domain, G-beta repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001680RepeatWD40 repeatInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR017252FamilyDynein regulator LIS1Interproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR006594Conserved_siteLIS1 homology motifInterproscan
IPR019775Conserved_siteWD40 repeat, conserved siteInterproscan
IPR037190Homologous_superfamilyLIS1, N-terminalInterproscan
IPR050349FamilyWD repeat LIS1/nudF dynein regulationInterproscan
IPR020472RepeatG-protein beta WD-40 repeatInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR44129WD REPEAT-CONTAINING PROTEIN POP1Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0000132Biological Processestablishment of mitotic spindle orientationInterproscan
GO:0000776Cellular ComponentkinetochoreInterproscan
GO:0005635Cellular Componentnuclear envelopeInterproscan
GO:0005875Cellular Componentmicrotubule associated complexInterproscan
GO:0005881Cellular Componentcytoplasmic microtubuleInterproscan
GO:0007097Biological Processnuclear migrationInterproscan
GO:0031023Biological Processmicrotubule organizing center organizationInterproscan
GO:0047496Biological Processvesicle transport along microtubuleInterproscan
GO:0051010Molecular Functionmicrotubule plus-end bindingInterproscan
GO:0070840Molecular Functiondynein complex bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K16794PAFAH1B1, LIS1; platelet-activating factor acetylhydrolase IB subunit alpha-Exosomeko04147deepkoala

Expression pattern
 Expression trend for OS493_004311-T1 global co-expression network
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