Gene detail

Detailed information of OS493_004008-T1 in Lophelia pertusa

Genomic Location: scaffold_8:1343054...1362956
NR annotation: KAJ7387044.1, S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

OS493_004008-T1

ATGTTCTTTTTCTCTCGAACAATCGTCTTGCTTGTAATTTTTATAGCCTTTCATGTAGATGCACATTCTCCGAAAGCCGATAAAGAGCCTAACTGGCAGGACAAGTTAATAAATTGGTGGCTTTCTGTAAGAATACCTGCCGCAAGTCTTATCATTGGAGGACTGAGCTTGTCTTGGCTGATTACCAGACTCAGAGGAAAAGACAAGTTCGCCTCAGAATATGCACAGAGAAAATCAAAACAGCAGGAACGTATAAGACCCTTGAAGGAGTCCTCATCTCTTGTGGAATCTGAAACCAACAGCAGAGGAACAGCCAGATCAGAGGGCCTCAAAATATTCTTTGGGACGCAGACAGGAAAGGCTAAGAACCTAGCAGAAGCTCTGCAATCAGAAGCACAAAATCTTGGATTGAGAAGTGAGGTGGTGGATTTAAAGAATTATGAACCAGAAGACAGTCTTTCAGAGGAGACGGACACTTGTGTGTTTATAGTCAGCACCTATGTGGATGGAAAGCCCACTGGCAGTACTGAGTGGTTTTACAAATGGCTAGAGGAAGCCTCAAATGATTTCCGTGTGCAAAAATCACTCCTGCGCGGTTTGGACTATGCAGTGTTTGGCCTTGGTGATTCTCTGTACGAGGACAGGTTCAACATGGTTGGAAAAAATGTTGACAAGTGGCTGGATTTGCTCAGTGCAAGACGGGTCTTTCCTTTTGGAATGGGAGATGAAAATGTGGCAAACAGCAAACATGGAGGCACTGAAGAGGATTTCAAATTTTGGAGTTCAGAAGTCCTGTCCCACATTAAGGATGCAAGAGAAAAATCAAAGAAGGGCTCCTGTCAATGTTCCAGTGAATCACAATCTGATGGCAAAGGCTGTTGTCAAGATCAAGAAGATCTTCTAGAAAATGAAAATCAAGATGATGAGATTATGTATGAAAGCACCAGTGAGGAATCTTCTGGAGACGATGAGGAAGAGAACAAAGCTGGCTTGTTAGACTTGGAGGATCTAGGTCCTATGATGAATACAATGAAAAAAGCTAAGGAAGAGAAAGAAGCTAGGAATGGCCCAAAGAGAATAATAGGTAAAAAGAAAAAGGTACATACAGAACCAAAAGAGATGATTACACCTGCACTGGAGAAAGCACTAACAAAACAAGGTTATCGTTTGATTGGCTCTCACTCTGGAGTTAAACTTTGCAGGTGGACAAAGTCAATGTTAAGAGGTCGTGGAGGCTGCTACAAACATACCTTCTATGGTATAGAGAGCCATCGCTGTATGGAGACCACGCCCAGCTTAGCTTGTGCCAATAAATGTGTCTTCTGTTGGAGACATCACACAAATCCTGTTGGAACAGAGTGGAAGTGGAAGATGGATGATCCAGACATGATTGTTAATGGCGCTATGGAGAATCATCGCAACATGATTAAACAGTTCAGAGGCGTTCCTGGTGTTAAACCTGAGCGTTTTGAAGAAGGAATGAAAATAAGACATTGTGCACTTTCACTTGTGGGTGAACCTATAATGTACCCAAAAATAAATGATCTCATCAAGATTCTTCACGGACATGACATTTCCACTTTTCTTGTCACCAATGCACAGTTTCCTGATGCTATCAGAAACCTCCTTCCAGTGACGCAGTTGTACGTGAGTGTGGATGCGAGCACGAAAGACAGCCTCAAGAAAATCGATCGCCCGTTGTTCAGAGATTTCTGGCCTCGCTTCCTTGAAAGTCTCAAGGCTTTATCAGAGAAGGGTCAGAGAACTGTATATCGTCTCACATTGGTGAAATCGTGGAACAATGAAGAACTCCAAAACTATGCCGACTTGGTTTCCATTGGCAAGCCAGACTTCATTGAAGTCAAGGGTGTGACATATTGTGGGGAGTCAAAAGCATCCACTCTGACAATGGCCAATGTACCATGGCACGAAGAGGTGATCGGCTTCGTTCAGAAGCTCACAGACCTGCTGCCCGATTACGATATCGCGTGTGAACACGAACATTCCAATTGTCTTCTCATCGCTCACAAGAAGTTCAAGAAAGACGATGGATGGTACACATGGATCGATTACCCAACATTTCATCAGCTGCTGCGTAGTTACGAAGAGAGCAATGGAGCAGAAAACTTCACTGCACTAGACTACATGGCCAAGACACCAGACTGGTCCTTAATGGGGCATGCGCAAAGGGGGTTTGATCCGCTGGAGACTCGCTGGCACCGCAAGAAGAAGAAGGACATCAGTGGCTGTTAA

Transcript

OS493_004008-T1

Protein

Uniprot

Uniprot term	Description
Q2KHP8	S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase TYW1 OS=Xenopus laevis OX=8355 GN=tyw1 PE=2 SV=1
Q9NV66	S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase TYW1 OS=Homo sapiens OX=9606 GN=TYW1 PE=1 SV=2
Q5REF9	S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase TYW1 OS=Pongo abelii OX=9601 GN=TYW1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08608	Wyosine_form	Wyosine base formation	Family	Interproscan
PF04055	Radical_SAM	Radical SAM superfamily	Domain	Interproscan
PF00258	Flavodoxin_1	Flavodoxin	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR034556	Family	S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase	Interproscan
IPR007197	Domain	Radical SAM	Interproscan
IPR013917	Domain	tRNA wybutosine-synthesis	Interproscan
IPR029039	Homologous_superfamily	Flavoprotein-like superfamily	Interproscan
IPR013785	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR001094	Domain	Flavodoxin-like	Interproscan
IPR008254	Domain	Flavodoxin/nitric oxide synthase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13930	S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008033	Biological Process	tRNA processing	Interproscan
GO:0031591	Biological Process	wybutosine biosynthetic process	Interproscan
GO:0051539	Molecular Function	4 iron, 4 sulfur cluster binding	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0051536	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0010181	Molecular Function	FMN binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15449	TYW1; tRNA wybutosine-synthesizing protein 1	EC:4.1.3.44	Transfer RNA biogenesis	ko03016	deepkoala

Expression pattern

Expression trend for OS493_004008-T1 global co-expression network