Detailed information of OS493_003951-T1 in Lophelia pertusa

Genomic Location: scaffold_8:728915...735521
NR annotation: KAJ7386989.1, hypothetical protein OS493_003951 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q9WTV0Guanine nucleotide-exchange factor SEC12 OS=Rattus norvegicus OX=10116 GN=Preb PE=1 SV=2
Q9WUQ2Guanine nucleotide-exchange factor SEC12 OS=Mus musculus OX=10090 GN=Preb PE=1 SV=1
 Gene family
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DWD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00400WD40WD domain, G-beta repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR045260FamilyGuanine nucleotide-exchange factor Sec12-likeInterproscan
IPR001680RepeatWD40 repeatInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23284PROLACTIN REGULATORY ELEMENT BINDING PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0003400Biological Processregulation of COPII vesicle coatingInterproscan
GO:0005085Molecular Functionguanyl-nucleotide exchange factor activityInterproscan
GO:0005096Molecular FunctionGTPase activator activityInterproscan
GO:0009306Biological Processprotein secretionInterproscan
GO:0030176Cellular Componentobsolete integral component of endoplasmic reticulum membraneInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K14003PREB, SEC12; prolactin regulatory element-binding protein-Membrane traffickingko04131deepkoala

Expression pattern
 Expression trend for OS493_003951-T1 global co-expression network
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