Detailed information of OS493_003656-T1 in Lophelia pertusa

Genomic Location: scaffold_7:4288149...4293241
NR annotation: KAJ7393985.1, hypothetical protein OS493_003656 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q87NG3Glycine betaine transporter 1 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) OX=223926 GN=VP1905 PE=1 SV=1
P9WPR6Uncharacterized transporter MT0942 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=MT0942 PE=3 SV=1
P9WPR7Uncharacterized transporter Rv0917 OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=Rv0917 PE=3 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02028BCCTBCCT, betaine/carnitine/choline family transporterFamilyInterproscan
PF04749PLAC8PLAC8 familyFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR018093Conserved_siteBCCT transporter, conserved siteInterproscan
IPR000060FamilyBCCT transporter familyInterproscan
IPR006461FamilyPLAC8 motif-containing proteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR30047HIGH-AFFINITY CHOLINE TRANSPORT PROTEIN-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0006810Biological ProcesstransportInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0016021Cellular ComponentmembraneInterproscan
GO:0022857Molecular Functiontransmembrane transporter activityInterproscan
GO:0071705Biological Processnitrogen compound transportInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K02168betT, betS; choline/glycine/proline betaine transport protein-Transportersko02000deepkoala

Expression pattern
 Expression trend for OS493_003656-T1 global co-expression network
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