Detailed information of OS493_003600-T1 in Lophelia pertusa

Genomic Location: scaffold_7:3543731...3550280
NR annotation: KAJ7393931.1, AP-3 complex subunit sigma-1 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q2YDH6AP-3 complex subunit sigma-1 OS=Bos taurus OX=9913 GN=AP3S1 PE=2 SV=1
Q92572AP-3 complex subunit sigma-1 OS=Homo sapiens OX=9606 GN=AP3S1 PE=1 SV=1
Q9DCR2AP-3 complex subunit sigma-1 OS=Mus musculus OX=10090 GN=Ap3s1 PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01217Clat_adaptor_sClathrin adaptor complex small chainDomainInterproscan
PF09032Siah-Interact_NSiah interacting protein, N terminal DomainInterproscan
PF05002SGSSGS domain DomainInterproscan
PF04969CSCS domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR052289FamilyCalcyclin-binding ubiquitin ligase bridgeInterproscan
IPR007699DomainSGS domainInterproscan
IPR022775DomainAP complex, mu/sigma subunitInterproscan
IPR015120DomainSiah interacting protein, N-terminalInterproscan
IPR008978Homologous_superfamilyHSP20-like chaperoneInterproscan
IPR000804Conserved_siteClathrin adaptor complex, small chainInterproscan
IPR037893DomainCalcyclin-binding Protein, CS domainInterproscan
IPR007052DomainCS domainInterproscan
IPR027155FamilyAP-3 complex subunit sigmaInterproscan
IPR011012Homologous_superfamilyLongin-like domain superfamilyInterproscan
IPR037201Homologous_superfamilyCalcyclin-binding protein, N-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13164CALICYLIN BINDING PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006886Biological Processintracellular protein transportInterproscan
GO:0016192Biological Processvesicle-mediated transportInterproscan
GO:0030117Cellular Componentmembrane coatInterproscan
GO:0015631Molecular Functiontubulin bindingInterproscan
GO:0031625Molecular Functionubiquitin protein ligase bindingInterproscan
GO:0044548Molecular FunctionS100 protein bindingInterproscan
GO:0006896Biological ProcessGolgi to vacuole transportInterproscan
GO:0030123Cellular ComponentAP-3 adaptor complexInterproscan

Expression pattern
 Expression trend for OS493_003600-T1 global co-expression network
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