Detailed information of OS493_003547-T1 in Lophelia pertusa

Genomic Location: scaffold_7:3090967...3098883
NR annotation: KAJ7393880.1, hypothetical protein OS493_003547 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q92828Coronin-2A OS=Homo sapiens OX=9606 GN=CORO2A PE=1 SV=2
Q9BR76Coronin-1B OS=Homo sapiens OX=9606 GN=CORO1B PE=1 SV=1
Q5NVK4Coronin-1B OS=Pongo abelii OX=9601 GN=CORO1B PE=2 SV=2
 Gene family
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyE3|E3 adaptor Cullin RING|CDC20

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF16300WD40_4Type of WD40 repeatRepeatInterproscan
PF00400WD40WD domain, G-beta repeatRepeatInterproscan
PF08953DUF1899Domain of unknown function (DUF1899)RepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001680RepeatWD40 repeatInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR015048DomainDomain of unknown function DUF1899Interproscan
IPR019775Conserved_siteWD40 repeat, conserved siteInterproscan
IPR015505FamilyCoroninInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10856CORONINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0007015Biological Processactin filament organizationInterproscan
GO:0051015Molecular Functionactin filament bindingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K13887CORO2; coronin-2-Cytoskeleton proteinsko04812deepkoala

Expression pattern
 Expression trend for OS493_003547-T1 global co-expression network
TOP