Gene detail

Detailed information of OS493_003489-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_003489-T1	CHITIN SYNTHASE	scaffold_7	2200997	2213147	-

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_003489-T1

ATGAATCAGTGGAAAGCATTGCTTGATCTCATGGCAAAGAGACCCAACTGTGGGTGCTGTTTTGTGAAGGACGCATCCCTTAGGGGTTGGGCCCATCGTCTGGGTACCAAATCTTTGATTAATGCAATTGGACACTGGTTCCAAAAGGTGGCAAATCATGTTCTTGGATCTGTTCTGTGTTCACCTGGCTGTTTCAGTGTTTACAGAGCCACTGCAGTCCGGGATGTGCTTCCCATATATTCAACCAAAGTTGACAACTCATTTGATTTTCTTACCAAAGACATGTCTGGCTGGCGGTTAGAATACTGTGCAGCGGCCGAGGATAGCACCTTCTGTCCAGAAAATTTTGACGAATTCTTCAAGCAGAGACGGCGTTGGATTCCATCTACTTTAGCCAATCTTGTGCTCCTGATCAGTGAATGGAAATTAACAGTGGGCAACAATGACTACATTTCATTTCCATTCATTCTCTACCAGGCACTGATGGTTTTCTCGACGATTATTAGTCCTTCCACCGTGATCCTAATCGTGGCAAGTGGTCTGTCATATGCCAATTTTTTCATTAACAGTAATGTTGTTCTTGTCATTCTGCTATCGCTACTTACTGTTGGATTTGCATTAATCTGCCTTTACACCTCACAAGAATTCCAGCTCAAAGTTGCAAAATTGTTGACAATCATGTTTGCCCTGTTGATGGCCTATGTGACAGTCGGTGTGGCCGCACAAGCTGCTGATGATTTGTACGAGCGTGAACACCCACCCACTTCCACTCCAGGCCCCGCAACTCACATGTACCCAACACAGAACAATACAAGGTTCACTAAAAGATCTCTGCTAGCTGTAGGCAATTCAAACGTAACTACTGCAGCTCTGGTATCCACTACGGCCATTCTTGACCTTGCTGAACGGCTCCCAGCTGATGTAAGCTCGCTGTATCTGGCGGGTCTGATCGGGATTTTCTTCGTGGCGGCCTTTTTACACCCCACAGAAGCTGGATGTTTGGTACACGGTATATGGTATCTACTGTGCCTTCCATCCGGTTATCTGTTGCTGTTTGTGTACTCTATATGTAACATGACAGATCGCTCATGGGGTACAAGAGAAGAGAAAACCAAGAAAGTGGATGATGTTCCTTGGTATCAGACTCTTTGGACAAAGATGAGGTTTATTTGTACATGTTGTAGACCTGAGCCAGCTCCTCAGCCTCCTGGCGATAGCAGGGTGGATGGACATGCAACTGATTCACCACCATCGTCTGTGGCCTCTACAGAGGAGAATTTCGAATCCGACAATGGCCTACAAGCTTCGGAAGATGAATCCACAATTCTTCCTGCAGCTGATGACTCAAGCACTACACTATTGGACGAGGCGCCACCCAAGTCAGCTATGAAGCAACCGCTAGCACGGCGGACATCTGTACCTCGCGATGGGCAAAAAGAGGACAGTGGCCGTTATCAGTCTAAATGGCGTTACCCTGGTGACAAGAAGGTTACATTCGCTACCAAGCTCCCACGGTTGCATCCTGAAACTGCTGTCGAGGATTGGCTACAAAGAGAGTTTCAGCAACTGTACTCGAACAACTTCAGAGAGTTTGGTTATGATAACGTGGGCTTTATCGCTGGCATGACAGACAAGCAATTAAAAGTCATTGGAATTGAGAAACGTGGTCATCGCAAGAAGCTGTTGATTGAAATCGAGAAGCTCCCTCAGGTGGAAATTCCACAGGAAGTACCGGAAAACATTGAAGATTGGTTAACTGAACTGGGACTTGATGAATACTGGGACAACTTTACCCAGAGTGGCTACACGGAACCAAGGATGTTAGAAGATCTCAAGATTATGAACAAAGAAACGCTAAAAGAGAACTTCAGAATCATCAAACCAGGACACTTGGATAAACTGTACAAGGCCATACAGAAAGTACAGTACCCGACCGAAGCTCAGAGGAGAATTCGTCGCGCTCGTGAAGAAACAAACAAATTGATTGTCATGGATTTAAAGGTGGATAATCAAGACAATGGACTGGAATATCTGTTTTGGGATGGTCTGCGGCAAGCCTGTCTCGTGCCGGAATCAGCCATATTTGGCGCAATTGAGGAACTAAAGGAGAAGCTTGAAGATCTCCGTGACTCGACTCTAATGGTGTTCGCCATTGCAAACGCTATCTGGATCATCCTGATAATGACTCTTGTCCAACAGAAAAACCTGCAATTCTTGGGAACCAACGTCCTGGGTCTCGCATTTCTCTGCATCTACGGCTTACTCATAGTTATACAATTCTTGACTCTCCTATGGCACAGGGGCGTGACGTTTTTCCACGTGATTGCGCGTGCGCCGTGGAGGCGTGGTCCTCTACACATGGTGTGGGCGTTTGATGACCAAAATCTGCCTCCTCCCCCCAATGAACGCGACTTGGAAGCCATCCGAAATAATCGAGACCGGAGACCTCGCAGGCGTCGAAATCAGGAGTACCGTCGGTATTCGAGTCAAGCCGAGCACATCCAGTGA

Transcript

OS493_003489-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03142	Chitin_synth_2	Chitin synthase	Family	Interproscan
PF07647	SAM_2	SAM domain (Sterile alpha motif)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001660	Domain	Sterile alpha motif domain	Interproscan
IPR004835	Family	Chitin synthase	Interproscan
IPR013761	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR029044	Homologous_superfamily	Nucleotide-diphospho-sugar transferases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22914	CHITIN SYNTHASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004100	Molecular Function	chitin synthase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006038	Biological Process	obsolete cell wall chitin biosynthetic process	Interproscan
GO:0016758	Molecular Function	hexosyltransferase activity	Interproscan
GO:0030428	Cellular Component	cell septum	Interproscan
GO:0071944	Cellular Component	cell periphery	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_003489-T1 global RNA-seq network