Gene detail

Detailed information of OS493_003225-T1 in Lophelia pertusa

Genomic Location: scaffold_6:6594524...6618545
NR annotation: KAJ7340476.1, AP-5 complex subunit zeta-1 [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

OS493_003225-T1

ATGTGGAACCTCCTGTGGAGCAGAAAAATATACCAATCATTATGCCTGTGGTGTGGGTTCAGGGTCAGGAACAAGGTCACTGGGCAAAATCATGTTCCACAGCTTGTCCAATGGCTTACCAAACCTGGGGTCCCTGTGGAGCTACAGACATTGTCGCTTGGATCTTTACAGTTATTGATACACATAGATGACAACATCATATCACAAGATGACGCTGGTGGAGTTAGTCGGCAAATGGCCAACTGGTTAAAAAATGCCAGCACTGTGTCAGCACCAAATCCTTATCAGAGACAGATATTCAGAGGAGGAAAAGCAAAGGGGTATCAGCTGGTCACTGAGGTTGATGGAACATCATCAAGATATTTCTTTACAGTGCTGAGTATTGCACAGTACTGTTTTCCAGACCAAGTTTTGAATGTCTACAGCTTTTCTATGTTGCGATCATGGCTTCAGCATCTCACATTTACCAGCACAAAGTCAAATTCTGCTTCTCCGAGAGATGGTCCTTCACCTCTGATTTTTGCAACTCCGTCAAATTCCAGCTCCGTCGAGAATCTCAACCAATCAGCTTATCCGTATGGATCTCCGTCCCATAATATCCTTAATCAAAGTCAATCAAGTATGGATAATGTCTCCATTGGTTCCCAGTCTTCTACTGGGTTTATTATCCCGCTGTCACGCTCCTCTCCACAGGAGTCTGAGAACCGGTCCTTGACCCAGTCCCCCATTCTTGGAACATCTCCTGATGAGCATTCTTTGTCAAGTGGCAGTGACTCTAGACCCCAGACTCCTTTAAGCTTTCCACTTGATGTGGAGGAGACTGGTGTCAAAGCTCAGCCACAACCGGCAGCAAAGCGAGGAAAACATCAGAGATCTATGTCATCATTAAGTTTTTCAAAAATGTTTCCTTCAAGTTTACATGGCACAAAAACTGGTGAACAAGAACTAAAGGAAAGAGCTTGTGAATACTGTCTGAGGCTTCTGGAACAAAGTGAAAGGAAACCATGCAAGCAACAAGATGTCATGTTAATTGAGGCATGTCTCGTTGAAGCCATCTACAACTTGGACATCCTATGCTCTGCAGACAAGTCGTTAATTCCTAAACTTATTGAGATCATAAGAAGACTTTATGCTCGAGTCACATCTGATGTCAACAGGTGGAAAAGAGTTCTGATTCCTGTAGTACAGTTCCTCCTTAACCATGGTGAAACAGTTGTCTTTGATCCTGAACCTGCCTGTAAAACTCTCCTGGGTCCTGTGCTAAGTTCCTATTATGCCAATTCTTCCCTCGCGTTTGATATTATTTTCTTTTGCCTGGAAAACGTGAGAAAACTCTGCATATCAACCACCATTCTTTTGAAGTATTTTCCAAATTTATTCAAGATCCTGGCATGGCAGCCACGTACATATGTCAAAGAATTCATGGACATGCTGCCCGCCATGCTAAATGAGGACACTGCTGTTGAGATGTTTCACACACTGTTGGATTTACCTTGCTTAGCTGCCGCTTTGTTTTTCGTACCTCTTCGGGCCACTAAAGGTACAAGGCCGAGACAGGGAGACACCATAGACAGACTTGCAACACTTCATTCTTTGTTAGAAGACAGGCTGGAACAACCTCGTGTTGTTGTATCTGCGCAAATTGCTCCGGTTTTATTGAATGTGATGTTTTCCACCATTCTGGAAGAAGCAGACGAGGAGACAGCAAGTCGTATGATCCCTGTCATACTAGAGAGAGTTGGACTCCTGTATCCTGTACAAAACTACCACAAAGAGATTCACGAGTTGCTGTCAGAGCGGCTTGTACAGTTGTGTCAGAAATATCCAAACCTGATTGTCAGGTATCAACAGGATATCATGGACTTTGTTAGCGGACTGAAGAACCTGGGGCCAACAAAAGAGAACTTTTTCGTTCACTTGGTGTGGGTTATAGGCGAGTTTGCCTCATCAGCGCATGACAGTGGATGTACCGTACAAAATATTGTGCAATACTTCGAGGCTTTTGAAGCTTTAAGTTATGAAGTTGTAATGCAGAATGCACCGGGAAAGGTTTCTTTCAGTGGAAGACTTGTTTCAGTTCTAATGACAACGTTGGCCAAGCTTGCATCAAGATGTCAGGATGTAATGCAGAGGGCTATTCTATGCTTGAGTAAAGTAGTGCGACAGAAACCAGAGCTTCTTTCAGACCCAGAGTGTTACCCAGATCTTCTGATGCGAGCCCAGGAACTAATCAACCTTCTAAAACTACCCAACGTGGCTCCTGTGATACTGAGCCCAGATTCAGAAGTTACAGCGGAAGGTGGCACAGAGACCGAAACTCGTCTTTACCTCTGCTCCTTCGCACTTGTGACACAATTCTTGCTTCGTGAATTCAAGAGGATTACGGGATTTTCACCAAGCTTGGGAAACTGTAGCCTGTTTTTTATTGTGATCCGTGAAGCAACAGTCTATTTCGCCATTTTATGGAGCCATGATCGCAAGAACAAAACAAGTGGAAACTCAAGTGGAAAATTGTTTTTGGATGAAAATGTTTTCCTTCAAAAAGTTCAAGTTAAGCAAGCGAGAACAGTTGTGAGACTTAAGGAATTTAACTGCAGAATGCCTGGTCACTTATTTGCACTAAGAATAGCGACTGTTGTTTTATGCCTCGTTCTACAAAGCACTCCGACACAAGAAAAATGA

Transcript

OS493_003225-T1

Protein

Uniprot

Uniprot term	Description
Q3U829	AP-5 complex subunit zeta-1 OS=Mus musculus OX=10090 GN=Ap5z1 PE=2 SV=1
O43299	AP-5 complex subunit zeta-1 OS=Homo sapiens OX=9606 GN=AP5Z1 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14764	SPG48	AP-5 complex subunit, vesicle trafficking	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011989	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR028222	Family	AP-5 complex subunit zeta-1	Interproscan
IPR016024	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46488	AP-5 COMPLEX SUBUNIT ZETA-1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0044599	Cellular Component	AP-5 adaptor complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K19025	AP5Z1, SPG48; AP-5 complex subunit zeta-1	-	DNA repair and recombination proteins	ko03400	deepkoala

Expression pattern

Expression trend for OS493_003225-T1 global co-expression network