Detailed information of OS493_003193-T1 in Lophelia pertusa

Genomic Location: scaffold_6:6156445...6168112
NR annotation: KAJ7340445.1, hypothetical protein OS493_003193 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q9W0T1Nucleosome-remodeling factor subunit NURF301 OS=Drosophila melanogaster OX=7227 GN=E(bx) PE=1 SV=2
Q12830Nucleosome-remodeling factor subunit BPTF OS=Homo sapiens OX=9606 GN=BPTF PE=1 SV=3
A0A7U2QYM2Histone acetyltransferase gcnE OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / IAM 13836 / NRRL 3357 / JCM 12722 / SRRC 167) OX=332952 GN=gcnE PE=1 SV=1
 Gene family
Gene familySubfamily
Ubiquitin FamilyE3|E3 activity RING|PHD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00628PHDPHD-fingerDomainInterproscan
PF00439BromodomainBromodomainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013083Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR001487DomainBromodomainInterproscan
IPR019787DomainZinc finger, PHD-fingerInterproscan
IPR018359Conserved_siteBromodomain, conserved siteInterproscan
IPR036427Homologous_superfamilyBromodomain-like superfamilyInterproscan
IPR011011Homologous_superfamilyZinc finger, FYVE/PHD-typeInterproscan
IPR038028FamilyNucleosome-remodeling factor subunit BPTFInterproscan
IPR001965DomainZinc finger, PHD-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45975NUCLEOSOME-REMODELING FACTOR SUBUNIT BPTFInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0016589Cellular ComponentNURF complexInterproscan
GO:0035064Molecular Functionmethylated histone bindingInterproscan

Expression pattern
 Expression trend for OS493_003193-T1 global co-expression network
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