Detailed information of OS493_002905-T1 in Lophelia pertusa

Genomic Location: scaffold_6:2053200...2081331
NR annotation: KAJ7340176.1, hypothetical protein OS493_002905 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
E9PY46Intraflagellar transport protein 140 homolog OS=Mus musculus OX=10090 GN=Ift140 PE=1 SV=1
Q96RY7Intraflagellar transport protein 140 homolog OS=Homo sapiens OX=9606 GN=IFT140 PE=1 SV=1
A8BAF1Intraflagellar transport protein 140 OS=Giardia intestinalis (strain ATCC 50803 / WB clone C6) OX=184922 GN=GL50803_0017251 PE=4 SV=1
 Gene family
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyE3|E3 adaptor Cullin RING|CDC20
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DWD

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
----------

 InterPro
InterPro termTypeDescriptionSource
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR001680RepeatWD40 repeatInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR011990Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15722IFT140/172-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005930Cellular ComponentaxonemeInterproscan
GO:0030991Cellular Componentintraciliary transport particle AInterproscan
GO:0035721Biological Processintraciliary retrograde transportInterproscan
GO:0036064Cellular Componentciliary basal bodyInterproscan
GO:0042073Biological Processintraciliary transportInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K19672IFT140; intraflagellar transport protein 140-Cilium and associated proteinsko03037deepkoala

Expression pattern
 Expression trend for OS493_002905-T1 global co-expression network
TOP