Detailed information of OS493_002903-T1 in Lophelia pertusa

Genomic Location: scaffold_6:2044203...2047913
NR annotation: KAJ7340174.1, NHP2-like protein 1 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q6P8E9NHP2-like protein 1 OS=Xenopus tropicalis OX=8364 GN=snu13 PE=2 SV=1
Q5XH16NHP2-like protein 1 OS=Xenopus laevis OX=8355 GN=snu13 PE=2 SV=1
Q3B8S0NHP2-like protein 1 OS=Bos taurus OX=9913 GN=SNU13 PE=2 SV=3

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01248Ribosomal_L7AeRibosomal protein L7Ae/L30e/S12e/Gadd45 familyDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002415FamilyH/ACA ribonucleoprotein complex, subunit Nhp2-likeInterproscan
IPR029064Homologous_superfamilyRibosomal protein eL30-like superfamilyInterproscan
IPR004037Conserved_siteLarge ribosomal subunit protein eL8-like, conserved siteInterproscan
IPR050257FamilyEukaryotic ribosomal RNA-processing and assembly proteinInterproscan
IPR018492FamilyRibosomal protein eL8/Nhp2 familyInterproscan
IPR004038DomainRibosomal protein eL8/eL30/eS12/Gadd45Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23105RIBOSOMAL PROTEIN L7AE FAMILY MEMBERInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005730Cellular ComponentnucleolusInterproscan
GO:0042254Biological Processribosome biogenesisInterproscan
GO:1990904Cellular Componentribonucleoprotein complexInterproscan
GO:0000398Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0000470Biological Processmaturation of LSU-rRNAInterproscan
GO:0022625Cellular Componentcytosolic large ribosomal subunitInterproscan
GO:0030490Biological Processmaturation of SSU-rRNAInterproscan
GO:0031428Cellular Componentbox C/D methylation guide snoRNP complexInterproscan
GO:0032040Cellular Componentsmall-subunit processomeInterproscan
GO:0046540Cellular ComponentU4/U6 x U5 tri-snRNP complexInterproscan
GO:0071011Cellular Componentprecatalytic spliceosomeInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K12845SNU13, NHP2L; U4/U6 small nuclear ribonucleoprotein SNU13-Ribosome biogenesisko03009deepkoala

Expression pattern
 Expression trend for OS493_002903-T1 global co-expression network
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