Detailed information of OS493_002878-T1 in Lophelia pertusa

Genomic Location: scaffold_6:1672752...1673963
NR annotation: KAJ7340151.1, Transcription factor Sox-8 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q9BG91Transcription factor SOX-9 OS=Callithrix jacchus OX=9483 GN=SOX9 PE=2 SV=1
P48436Transcription factor SOX-9 OS=Homo sapiens OX=9606 GN=SOX9 PE=1 SV=1
P61753Transcription factor SOX-9 OS=Macaca mulatta OX=9544 GN=SOX9 PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00505HMG_boxHMG (high mobility group) boxDomainInterproscan
PF12444Sox_NSox developmental protein N terminal FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036910Homologous_superfamilyHigh mobility group box domain superfamilyInterproscan
IPR009071DomainHigh mobility group box domainInterproscan
IPR022151DomainSox developmental protein N-terminalInterproscan
IPR050917FamilySOX Transcription FactorsInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45803SOX100BInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0006357Biological Processregulation of transcription by RNA polymerase IIInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K18435SOX9; transcription factor SOX9 (SOX group E)-Transcription factorsko03000deepkoala

Expression pattern
 Expression trend for OS493_002878-T1 global co-expression network
TOP