Gene detail

Detailed information of OS493_002721-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_002721-T1	DENN DOMAIN-CONTAINING PROTEIN 4	scaffold_5	6951454	6995623	+

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_002721-T1

ATGGACAGTCACTTCAGCAAGTTGCCAAACAGTTTGATTGAGATCTGTGTTGTGGTGGGCATGGATCAAGATACAGGCCTTAAACCAGCTTCATCACCAGAGAGCAGAAAAGTGTTAAAAGGCAGTACAACTGATCATCGTTTGTTTTCGACCATGTATGAGACCAATGTATTGGCTGCATTGTCAGGAGAAGTGGCCTCATTTCCTTATACAACACCTGAATTTAATGGGGAGCCATTTTATCCTACTTTTGGGGTTCTGTGTAGCCCAGCTAAAGGAGGAAACCCATCAAGGCACCGCCGCGGATCATTCAGAGGCAGTGCAGCTGAGTTACCACTGGCTCAAGATGTCATCAATAGCTTGCCACCACTCTGTTTTCCTGAAGGTGGATTCATTTCCAAGAAAAAGAAACCAGTTATCTGTCATTCATTGGTCCTCACGGATATTGAGGGGAACCGCACGTATTGTACCTGTATGACATTTTACAGAGGATTTATCATCCAGGAGGATGAAGATATTCCTGGCAATTATAAGTTGTTTTACACGGATGAGAAAAGTGATGGAAATGTTCTGCAGGATTCTTCTCATAAAATGTGTTACGTGCCAACATGTTGCTGTTTAATTTCCAAGTGGCCTTATTTGAACATTATGAAGGACTGTCTGTCTAGTCTGTTGCCACAAGTGATGACAAGTGACTCGCGTCGCTTCAAAATGGCTTTAATGCAGTTTGTATCTCAATTAGCCATGGTACCAGTCCCTCCGCCAGGCTCTCTAGGAATAGAATTTGAGCTGTATGGAGTAAACCATCTTGTGCGGCCCGCCGAAGATCCAGATACCAGAGTAATAAACATGGACCTTCATTACCCATTTCTGTACTTCACGTTGGATGACATCCTACTTCTAATTGGCTGCATTCTCACTCAACAAAGGATTGTCTTCATCTCTCCGTCATATTCCCTCCTCACTCCTATCATTGAGAGCTTGTTCACCTTCATTCAACCATTTTCATGGAGTTGGACATATGTACCAATTCTTCCAAGTGCACTTATTGATCTAGTCGAAGCCCCTGGTGCATTTATTATGGGATGTCACTCACAGTACAAGAGTCAGATACAACGAGTTGTCATGGAGATGGACGAGTTGTCCAGCATTGTTATTGCGGACATTGACGAGGGATCGGTCACGTTACACCCAAAAGCCAGACTTCCACGACTGCCAACGTATGCAACAGACATGTATAAATTCAGGATGAAAAACGCAGCAATCCATTTTGACAGGCTCCTGATTCAAAGGCAAACATTCTACAGCTTAAAAGAATTTAAAGAGGAAAGAGAACAGTTTGTAAGAGATTTTCAACAGCTTGTTTTGGCATCTACGTTGGAGATGATGTTACGAATGTTCAGTGACATGAAAAGTTTCATTGACCGACAAGAAGATCTTTTCTTTGATATGGATTCTTACATCGAGTCAAAGCCTTCAGAAGACCAAGAGTTTTATCGTGAGGTGTGCAAGAGTCATGCATTCAGTACGTTTCTTTATGACCTCATGCACGACCCAGAAAAGACAGACTACTTTACTCTCATGGCTCAGAAAACGAGAGTTATTCCCAAGGTAGGACCTTTGCGAAAAAGAAGTTCATCTACCGTGCCTGTCCCTGTCATATCCGAAGAATATTTTGTAAACCCACAAGAAAATCTGAGCATCTTCGTTCTTCCACCATTCACGCTTGAAGGAATTTACACAGGAAGTTTCTACGAAGAATACTTGAAGTCCTTGAATTACAAAATCTCGGATCTTACGAACAAGACTTCAAGTCTTCTTGCCAACTACTTGTACCTGCGCGGGATGTTAAGAATTGCCTGTGGACATAACATCAAGGCGGTAGATGACTTCTTTGGAGTTTCGTCGAGAAATGTGCAGCTCTTTCCAACCACAAGAGCTAAGAACGAGACATTTTGGAGAAAAGCTGAGCATCTAAGACAGCAATCCAAGGAAAAGATAGACTTCTGGCGAGATAGGAAAGAAGTGGTCACTTCAGCAATCCCGTCTAATCCTTTGGTTCTTGCAGAATTCGTGAAACATGTCAGCATGTTACAGATTGCCAACAGTCAAGATGCGGGGACAAGGCTGTTCCAAGCATTGACAATGAATTCCAGGACGGAAGTGGTTGATCCTGAAACGTTTGCTGGATTTCTACGAAGCTTTCACCGAGGTAACGAATGCGCCAGTATCAAAGCCAAGAGTGTCTCACTGCGTAATGTTCTCTTGGAAGAAAATGAGTATGTGCTGAAGATCTCGCAACATATCAAGACCAACCAGGGAATGGGCTGGCTTGTTCTTACATTCAGGAGGTTGTTGTTCTTGCCCGATGGAACACAATATTGTACTCCTGTTGTAAGCAACGAAGACATCAAGAGTGTCAAGCCATTCTCAGAAAGCCTGCTCTCTCGTGGGATTACAGCCATTAAAATTACCAGCAAATCTAAGGCTTCACTGTCGTTCGTAGCTTCTGTCAAGGAAGACAAGGATTCCTGGCGTAATTGTTTGTTGGAAATTAAAGCGGGATACGCGATTGCTGACGCTTGGAAGGACCCGCAGATAATAAAACAAGCTGCTCAGAATGTGATCATGGCAGACGCTCTTACACAAAGTGACTACCCAGAGCAAACTGCAATGCATGTCCTGTATTTTAGCACCCAAAGTGACTTCCAAGATCGGTTGTCAGATCATACCAGAAAGACGCTGATAAAGAGAGTTAGTCCGTCACCTCAGGACATGGAGAAGACAACCGTAGAGGCACTTCTTTATGTTCCCGCTTCAAAAGATAGCGGCCCGAAGGTCTGGTGCGCTATGGGCTCTGGTCTTGTTGTCGTGATAGATGCAGACGAGTGGGAATATGAGGCACACATGAGACATGCAAAGGACAGGGTGAGTTGCTTGTTGGCAGTTGGAAAGAACCAGGTCTGGGCTGGCTCACTAGATACCACTATCTACGTCATCAACACGCTTACTGGAAAAGCTGATCAACAACTCTTGGGACATCGCGACTCCCTCTCGCACATGATCGAAACTCGGGATTCACAAGGGCACACCACCGTGTGGAGCGCCAGTTCGAACGGACAGATCGTAGGTTGGGATCCTGTGACTCTTACAGCTAAGAAAGAGCTTCAGGTCAAACTAAATCAAAAGGACAGGAAAACGCTTTATTGGTTTGCTGCTGTTGGAGATACATTCTGGTGTGCAACTAGGTTTTCAGTTTACGTCATCAATTACGAGAGAGACCATGAAGCCACCAAAGTTCTGACTCCCGAGGATGGCGTCCCTCTGAGCATTGACTGCATGTGTAAAGTGTCTGATACACGGGTATGGACCGGCTGTGACAGGAAAGGTCTTATTGTCACATGGAACACTGATACTTGCAAAAGCGAACATTGTGACGCTTGCAAATGTGCGGGTGGCTTCACGTACATGCTTCCAGTAGACAACAAGGTCTGGGCTGGAAGCAAAAGTGGCACAATCTACGTCATGAACTCCGATACGTGTCAAGTAGAAATGGAGTTGTGTTTACACCAGGACCGCGTCCGCTCAATGTGCATTACAGACTACGGGTTTGTAATCTCGGGTCCCGGGTCCCGGGACGGGCGCATTGCCGTGTGGCGATCACATCTTACGGAAGACAACTGTTCCCCATGCCCCAAACCAGAACTGGAAACAGTAGAGGCTGGTATTTGCGAGGGAGAGCAAGGCTTTCAAATGGTTTGCAAGAAAGATACAGTACAGTTCGATCTGGATCGCAACGAAACTCACTACCTATCGAAATCTGCGACTTATTAG

Transcript

OS493_002721-T1

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02141	DENN	DENN (AEX-3) domain	Family	Interproscan
PF03456	uDENN	uDENN domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001194	Domain	cDENN domain	Interproscan
IPR005113	Domain	uDENN domain	Interproscan
IPR011047	Homologous_superfamily	Quinoprotein alcohol dehydrogenase-like superfamily	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR037516	Domain	Tripartite DENN domain	Interproscan
IPR043153	Homologous_superfamily	DENN domain, C-terminal lobe	Interproscan
IPR051696	Family	DENN Domain-Containing GEFs	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12296	DENN DOMAIN-CONTAINING PROTEIN 4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0031410	Cellular Component	cytoplasmic vesicle	Interproscan
GO:0032483	Biological Process	regulation of Rab protein signal transduction	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_002721-T1 global RNA-seq network