Gene detail

Detailed information of OS493_002721-T1 in Lophelia pertusa

Genomic Location: scaffold_5:6951454...6995623
NR annotation: KAJ7365979.1, Rab guanyl-nucleotide exchange factor [Desmophyllum pertusum]

Gene Structure

More details in Jbrowse

Sequence

CDS

OS493_002721-T1

ATGGACAGTCACTTCAGCAAGTTGCCAAACAGTTTGATTGAGATCTGTGTTGTGGTGGGCATGGATCAAGATACAGGCCTTAAACCAGCTTCATCACCAGAGAGCAGAAAAGTGTTAAAAGGCAGTACAACTGATCATCGTTTGTTTTCGACCATGTATGAGACCAATGTATTGGCTGCATTGTCAGGAGAAGTGGCCTCATTTCCTTATACAACACCTGAATTTAATGGGGAGCCATTTTATCCTACTTTTGGGGTTCTGTGTAGCCCAGCTAAAGGAGGAAACCCATCAAGGCACCGCCGCGGATCATTCAGAGGCAGTGCAGCTGAGTTACCACTGGCTCAAGATGTCATCAATAGCTTGCCACCACTCTGTTTTCCTGAAGGTGGATTCATTTCCAAGAAAAAGAAACCAGTTATCTGTCATTCATTGGTCCTCACGGATATTGAGGGGAACCGCACGTATTGTACCTGTATGACATTTTACAGAGGATTTATCATCCAGGAGGATGAAGATATTCCTGGCAATTATAAGTTGTTTTACACGGATGAGAAAAGTGATGGAAATGTTCTGCAGGATTCTTCTCATAAAATGTGTTACGTGCCAACATGTTGCTGTTTAATTTCCAAGTGGCCTTATTTGAACATTATGAAGGACTGTCTGTCTAGTCTGTTGCCACAAGTGATGACAAGTGACTCGCGTCGCTTCAAAATGGCTTTAATGCAGTTTGTATCTCAATTAGCCATGGTACCAGTCCCTCCGCCAGGCTCTCTAGGAATAGAATTTGAGCTGTATGGAGTAAACCATCTTGTGCGGCCCGCCGAAGATCCAGATACCAGAGTAATAAACATGGACCTTCATTACCCATTTCTGTACTTCACGTTGGATGACATCCTACTTCTAATTGGCTGCATTCTCACTCAACAAAGGATTGTCTTCATCTCTCCGTCATATTCCCTCCTCACTCCTATCATTGAGAGCTTGTTCACCTTCATTCAACCATTTTCATGGAGTTGGACATATGTACCAATTCTTCCAAGTGCACTTATTGATCTAGTCGAAGCCCCTGGTGCATTTATTATGGGATGTCACTCACAGTACAAGAGTCAGATACAACGAGTTGTCATGGAGATGGACGAGTTGTCCAGCATTGTTATTGCGGACATTGACGAGGGATCGGTCACGTTACACCCAAAAGCCAGACTTCCACGACTGCCAACGTATGCAACAGACATGTATAAATTCAGGATGAAAAACGCAGCAATCCATTTTGACAGGCTCCTGATTCAAAGGCAAACATTCTACAGCTTAAAAGAATTTAAAGAGGAAAGAGAACAGTTTGTAAGAGATTTTCAACAGCTTGTTTTGGCATCTACGTTGGAGATGATGTTACGAATGTTCAGTGACATGAAAAGTTTCATTGACCGACAAGAAGATCTTTTCTTTGATATGGATTCTTACATCGAGTCAAAGCCTTCAGAAGACCAAGAGTTTTATCGTGAGGTGTGCAAGAGTCATGCATTCAGTACGTTTCTTTATGACCTCATGCACGACCCAGAAAAGACAGACTACTTTACTCTCATGGCTCAGAAAACGAGAGTTATTCCCAAGGTAGGACCTTTGCGAAAAAGAAGTTCATCTACCGTGCCTGTCCCTGTCATATCCGAAGAATATTTTGTAAACCCACAAGAAAATCTGAGCATCTTCGTTCTTCCACCATTCACGCTTGAAGGAATTTACACAGGAAGTTTCTACGAAGAATACTTGAAGTCCTTGAATTACAAAATCTCGGATCTTACGAACAAGACTTCAAGTCTTCTTGCCAACTACTTGTACCTGCGCGGGATGTTAAGAATTGCCTGTGGACATAACATCAAGGCGGTAGATGACTTCTTTGGAGTTTCGTCGAGAAATGTGCAGCTCTTTCCAACCACAAGAGCTAAGAACGAGACATTTTGGAGAAAAGCTGAGCATCTAAGACAGCAATCCAAGGAAAAGATAGACTTCTGGCGAGATAGGAAAGAAGTGGTCACTTCAGCAATCCCGTCTAATCCTTTGGTTCTTGCAGAATTCGTGAAACATGTCAGCATGTTACAGATTGCCAACAGTCAAGATGCGGGGACAAGGCTGTTCCAAGCATTGACAATGAATTCCAGGACGGAAGTGGTTGATCCTGAAACGTTTGCTGGATTTCTACGAAGCTTTCACCGAGGTAACGAATGCGCCAGTATCAAAGCCAAGAGTGTCTCACTGCGTAATGTTCTCTTGGAAGAAAATGAGTATGTGCTGAAGATCTCGCAACATATCAAGACCAACCAGGGAATGGGCTGGCTTGTTCTTACATTCAGGAGGTTGTTGTTCTTGCCCGATGGAACACAATATTGTACTCCTGTTGTAAGCAACGAAGACATCAAGAGTGTCAAGCCATTCTCAGAAAGCCTGCTCTCTCGTGGGATTACAGCCATTAAAATTACCAGCAAATCTAAGGCTTCACTGTCGTTCGTAGCTTCTGTCAAGGAAGACAAGGATTCCTGGCGTAATTGTTTGTTGGAAATTAAAGCGGGATACGCGATTGCTGACGCTTGGAAGGACCCGCAGATAATAAAACAAGCTGCTCAGAATGTGATCATGGCAGACGCTCTTACACAAAGTGACTACCCAGAGCAAACTGCAATGCATGTCCTGTATTTTAGCACCCAAAGTGACTTCCAAGATCGGTTGTCAGATCATACCAGAAAGACGCTGATAAAGAGAGTTAGTCCGTCACCTCAGGACATGGAGAAGACAACCGTAGAGGCACTTCTTTATGTTCCCGCTTCAAAAGATAGCGGCCCGAAGGTCTGGTGCGCTATGGGCTCTGGTCTTGTTGTCGTGATAGATGCAGACGAGTGGGAATATGAGGCACACATGAGACATGCAAAGGACAGGGTGAGTTGCTTGTTGGCAGTTGGAAAGAACCAGGTCTGGGCTGGCTCACTAGATACCACTATCTACGTCATCAACACGCTTACTGGAAAAGCTGATCAACAACTCTTGGGACATCGCGACTCCCTCTCGCACATGATCGAAACTCGGGATTCACAAGGGCACACCACCGTGTGGAGCGCCAGTTCGAACGGACAGATCGTAGGTTGGGATCCTGTGACTCTTACAGCTAAGAAAGAGCTTCAGGTCAAACTAAATCAAAAGGACAGGAAAACGCTTTATTGGTTTGCTGCTGTTGGAGATACATTCTGGTGTGCAACTAGGTTTTCAGTTTACGTCATCAATTACGAGAGAGACCATGAAGCCACCAAAGTTCTGACTCCCGAGGATGGCGTCCCTCTGAGCATTGACTGCATGTGTAAAGTGTCTGATACACGGGTATGGACCGGCTGTGACAGGAAAGGTCTTATTGTCACATGGAACACTGATACTTGCAAAAGCGAACATTGTGACGCTTGCAAATGTGCGGGTGGCTTCACGTACATGCTTCCAGTAGACAACAAGGTCTGGGCTGGAAGCAAAAGTGGCACAATCTACGTCATGAACTCCGATACGTGTCAAGTAGAAATGGAGTTGTGTTTACACCAGGACCGCGTCCGCTCAATGTGCATTACAGACTACGGGTTTGTAATCTCGGGTCCCGGGTCCCGGGACGGGCGCATTGCCGTGTGGCGATCACATCTTACGGAAGACAACTGTTCCCCATGCCCCAAACCAGAACTGGAAACAGTAGAGGCTGGTATTTGCGAGGGAGAGCAAGGCTTTCAAATGGTTTGCAAGAAAGATACAGTACAGTTCGATCTGGATCGCAACGAAACTCACTACCTATCGAAATCTGCGACTTATTAG

Transcript

OS493_002721-T1

Protein

Uniprot

Uniprot term	Description
A2RT67	DENN domain-containing protein 3 OS=Mus musculus OX=10090 GN=Dennd3 PE=1 SV=2
A2RUS2	DENN domain-containing protein 3 OS=Homo sapiens OX=9606 GN=DENND3 PE=1 SV=2
Q6NTN5	Myotubularin-related protein 13 OS=Xenopus laevis OX=8355 GN=sbf2 PE=2 SV=1

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03456	uDENN	uDENN domain	Domain	Interproscan
PF02141	DENN	DENN (AEX-3) domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005113	Domain	uDENN domain	Interproscan
IPR037516	Domain	Tripartite DENN domain	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR051696	Family	DENN Domain-Containing GEFs	Interproscan
IPR043153	Homologous_superfamily	DENN domain, C-terminal lobe	Interproscan
IPR011047	Homologous_superfamily	Quinoprotein alcohol dehydrogenase-like superfamily	Interproscan
IPR001194	Domain	cDENN domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12296	DENN DOMAIN-CONTAINING PROTEIN 4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0031410	Cellular Component	cytoplasmic vesicle	Interproscan
GO:0032483	Biological Process	regulation of Rab protein signal transduction	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K20162	DENND3; DENN domain-containing protein 3	-	Membrane trafficking	ko04131	deepkoala

Expression pattern

Expression trend for OS493_002721-T1 global co-expression network