Gene detail

Detailed information of OS493_002407-T1 in Lophelia pertusa

Genomic Location: scaffold_5:1774183...1787174
NR annotation: KAJ7365692.1, snoRNA-binding rRNA-processing protein [Desmophyllum pertusum]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q7ZXZ2	U3 small nucleolar RNA-associated protein 15 homolog OS=Xenopus laevis OX=8355 GN=utp15 PE=2 SV=1
Q5F3D7	U3 small nucleolar RNA-associated protein 15 homolog OS=Gallus gallus OX=9031 GN=UTP15 PE=2 SV=1
Q5XGE2	U3 small nucleolar RNA-associated protein 15 homolog OS=Xenopus tropicalis OX=8364 GN=utp15 PE=2 SV=1

Gene family

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF12894	ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	Repeat	Interproscan
PF09384	UTP15_C	UTP15 C terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR024977	Domain	Anaphase-promoting complex subunit 4-like, WD40 domain	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR018983	Domain	U3 small nucleolar RNA-associated protein 15, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19924	UTP15 U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 15 FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan
GO:0006364	Biological Process	rRNA processing	Interproscan
GO:0045943	Biological Process	positive regulation of transcription by RNA polymerase I	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14549	UTP15; U3 small nucleolar RNA-associated protein 15	-	Ribosome biogenesis	ko03009	deepkoala

Expression pattern