Gene detail

Detailed information of OS493_001798-T1 in Lophelia pertusa

Genomic Location: scaffold_4:1232523...1235778
NR annotation: KAJ7375066.1, Poly(A)+ RNA export protein rae1 [Desmophyllum pertusum]

Gene Structure

Sequence

Uniprot

Uniprot term	Description
Q7ZWF0	mRNA export factor OS=Danio rerio OX=7955 GN=rae1 PE=2 SV=2
Q5FVA9	mRNA export factor OS=Xenopus tropicalis OX=8364 GN=rae1 PE=2 SV=1
Q9W2E7	Protein Rae1 OS=Drosophila melanogaster OX=7227 GN=Rae1 PE=1 SV=1

Gene family

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10971	MRNA EXPORT FACTOR AND BUB3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000972	Biological Process	transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005643	Cellular Component	nuclear pore	Interproscan
GO:0006405	Biological Process	RNA export from nucleus	Interproscan
GO:0043130	Molecular Function	ubiquitin binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13341	PEX7, PTS2R; peroxin-7	-	Peroxisome	ko04146	deepkoala

Expression pattern