Detailed information of OS493_001723-T1 in Lophelia pertusa

Genomic Location: scaffold_4:447100...454744
NR annotation: KAJ7374996.1, Poly(A)+ RNA export protein rae1 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q7ZWF0mRNA export factor OS=Danio rerio OX=7955 GN=rae1 PE=2 SV=2
Q8C570mRNA export factor OS=Mus musculus OX=10090 GN=Rae1 PE=1 SV=1
A5GFN6mRNA export factor OS=Sus scrofa OX=9823 GN=RAE1 PE=3 SV=1
 Gene family
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Beta-prp

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
----------

 InterPro
InterPro termTypeDescriptionSource
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10971MRNA EXPORT FACTOR AND BUB3Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0000972Biological Processtranscription-dependent tethering of RNA polymerase II gene DNA at nuclear peripheryInterproscan
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005643Cellular Componentnuclear poreInterproscan
GO:0006405Biological ProcessRNA export from nucleusInterproscan
GO:0043130Molecular Functionubiquitin bindingInterproscan

Expression pattern
 Expression trend for OS493_001723-T1 global co-expression network
TOP