Detailed information of OS493_001705-T1 in Lophelia pertusa

Genomic Location: scaffold_4:241412...242281
NR annotation: KAJ7374978.1, Transcription factor SOX-4 [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P40639SRY-related protein AES4 (Fragment) OS=Alligator mississippiensis OX=8496 PE=3 SV=1
P40637SRY-related protein AES1 (Fragment) OS=Alligator mississippiensis OX=8496 PE=3 SV=1
P40650Transcription factor Sox-11-B OS=Xenopus laevis OX=8355 GN=sox11-b PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00505HMG_boxHMG (high mobility group) boxDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036910Homologous_superfamilyHigh mobility group box domain superfamilyInterproscan
IPR009071DomainHigh mobility group box domainInterproscan
IPR050140FamilySRY-related HMG-box transcription factorsInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10270SOX TRANSCRIPTION FACTORInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000978Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0006355Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0009653Biological Processanatomical structure morphogenesisInterproscan
GO:0030154Biological Processcell differentiationInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K23581SOX4; transcription factor SOX4 (SOX group C)-Transcription factorsko03000deepkoala

Expression pattern
 Expression trend for OS493_001705-T1 global co-expression network
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