Detailed information of OS493_001683-T1 in Lophelia pertusa

Genomic Location: scaffold_3:8315341...8329549
NR annotation: KAJ7381533.1, Cadherin cytoplasmic C-terminal, partial [Desmophyllum pertusum]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00028CadherinCadherin domainDomainInterproscan
PF13895Ig_2Immunoglobulin domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR039808FamilyCadherinInterproscan
IPR013783Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR008983Homologous_superfamilyTumour necrosis factor-like domain superfamilyInterproscan
IPR007110DomainImmunoglobulin-like domainInterproscan
IPR020894Conserved_siteCadherin conserved siteInterproscan
IPR003599DomainImmunoglobulin subtypeInterproscan
IPR036179Homologous_superfamilyImmunoglobulin-like domain superfamilyInterproscan
IPR002126DomainCadherin-likeInterproscan
IPR015919Homologous_superfamilyCadherin-like superfamilyInterproscan
IPR003598DomainImmunoglobulin subtype 2Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24027CADHERIN-23Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005509Molecular Functioncalcium ion bindingInterproscan
GO:0016342Cellular Componentcatenin complexInterproscan
GO:0045296Molecular Functioncadherin bindingInterproscan
GO:0098609Biological Processcell-cell adhesionInterproscan
GO:0098742Biological Processcell-cell adhesion via plasma-membrane adhesion moleculesInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005886Cellular Componentplasma membraneInterproscan
GO:0007155Biological Processcell adhesionInterproscan
GO:0007156Biological Processhomophilic cell adhesion via plasma membrane adhesion moleculesInterproscan
GO:0016020Cellular ComponentmembraneInterproscan

Expression pattern
 Expression trend for OS493_001683-T1 global co-expression network
TOP