Gene detail

Detailed information of OS493_001683-T1 in Lophelia pertusa Gene info

Gene ID	Annotation	Scaffold	Start	End	Strand
OS493_001683-T1	CADHERIN-23	scaffold_3	8315341	8329549	+

Gene Structure

More details in Jbrowse Sequence

CDS

OS493_001683-T1

ATGACCATAGTGCTGGATGGGCAGCCAAGCAAAATTGCTGTGACGACATTTCAGCCAATACCTTCAAATTCCCCAAGTGGTAACTTCGTTAGCACTTTGACACTAGCGAGTACACTGCGCCTTGTCGCAGATCAGTATCTTTCCATTTTTATAGAAGTACAGTGTCAAAGTGTTGCTCCTTGGAAAGTGTTGGCAAACAGCAGTTTTTCCGTTGTCTTGGTTTCCCGTTGGGAAAGTGATTATAACGCCGGATTTCTGACAAATAGTATTATTTCAGAATTCAACAACGCAGGTTATAATATAATTAACTACTGGGATGTTCCATTGTTTTCTAAAAACTTTAACGTAACATGGTTTGATGGAATAAATATAAAGAACAGTGGTCTGTATTTCCTACAGAGCGTTGTGATTTTAGATGACCGCCTAGGCAACAAGACCTTTGATAGTGTAGTTTGTACTGCTAACAAAATTGCTTTAAGTGGTATCACGGCTTCAAAAGTAAGTGAAGGACTAACTGGCGAATTTGCCATAAGTGCATTTGGAGTGCTATACCTTAGAAAAGGACAGAACGTTAATCTATGCGTGAGATCCAAAACTAACACTAACTACCAAAGGAGAAACGGTTCTTGGTTTTCTATGGTTCGATTTCTCCCTCTTGGTCAACCACCAGGCTTTCATCAAATCCTTCAGGATACTCGTAATATATCAGTTTATTGTGAATGGTCGGTGATACGATCTATGTCAACTGGTGGAGGTCAGCTGGCTTACATAAAGAACAACATTTTCAATCCCAACCCGACATTACCATGTGATAAAGAAGATTTTACTGCACCTTTAAGTGGCACTTATTTGATATCTGTAATGTTCACCCTTAAAGGAAACGCCTCGGATAATGTGACTACCTGTGTTGGAATACGAAAATGTGGAGAGTGTTACATTGAAGTTACGAATACTGTAAGACAATACAGCAACACCTTTGGATTTGTAGGACTCGTTGATCTTGAAAAGGGCCAGCTTATTTCCACGTGTCTTAAATCTAAAGATCAAGCATTTTCTATTAAAACAGGTACGCGCTCCGTCCAATTTTTGAGTGTAGTGGAACTGAACAGAACTGTTCAACTGAAACATCGATCTGTTGGTTTGAGTTCTAGTGGATGGCACGAGCTAGTTGAGTGGGAGACCCGTAGTGGCAAATCCTTGCAGAAATCAGTTCCCGTGAAGGAGAATGGGCTTTATATTCTTTCTACTAACTTGCATCTGGAAGTTGATGAAGAAAGCCTTGTCGGAGTAAAGTTAGAAGCAACAGGATCGTCCAATCGCGATGTCCTGTCTATTTTATCCAACTCTGAAGCAGACTCTACTGTCACATATAGCGTGGCTGTTGTTGCTCGTCTGAATGCATCGGAAGAGATTGCTGTTTCTGTATACTCCAATTCCCAATACGCGAGTACAAGTAATACTACATTTTTTGCTGCACTGGTCACGCAAGAAAACCAACATCCTTGTTTATCATTGCGATCTAAAACAAGTAGATACGACAGTGGAGAATGGTGGAAAGGTATCGAGCATTGGGAAAGCGTTGACGCACAGTGTGTGTCTCCAAACTCGGATGTCAGCAAAGGAATATTTGTTGCTGATGTGGCTGGTGTTTACTTCCTTGCTGCCGTAGTTGTGGTGAGGACTTCACATTTATCGCATCAAACGAGATTGGTAGAACTTTTGCTATCGGTCAATGGAGATACAATAAACACTAATGGCTTAAAAGCTACAAAGGGCGTTACAGATGGTTTGTCCGTTGTTCTCAGTTTATCTGCAACTGCTTATCTGGAGCCGTGGCAAACTTTGTATCTAATGATTAGAAGCACTGGTGTGGGAGCATTTGAAGTAGTCAACGGAAGCACGTTTAGTGTGGCACTGATAGAGGAAACAAAGTACTACAAAACAGTGGCTACGAATATTACTCACTTTGACAATGGCCCTCGTGTTACACGTCATCCACCACCATCTGTGAGCCTTGGCGATGATCTGGGATTGAATGTTTCATGGACTTGTGATGCAGTTGCCAAAGGCAATGTGGCGTATAATTGGTTAAAGAACGATCAGATCATCACTTCCTCTCGTGATCTGTCTCTTGAAAATGTTAAATTGTCCGACTCGGGTCAATACGTCTGTCTGGCTGAATATGATAGCATCAAGGTCTTCTCACAGGCTGCTGAGCTTCATGTATTTGATACCACTCCTCAGTTTGAGAACAAAGTGTTTACTGCCCAAGAAAACAGCAATGCTTCATTTGAGCTTACGTTCAGTGCTTTGGATGAGCAACGCAGACCTGCCAACGTTTCACTCGACATTATTAAAGGTAACACGAATGACACGTTTGTACTTTCCTGTGGAGTATCAAAAGACAAATTCACCATGAGAAATCGAATGCCATTAGATCACGAGACCAAAAATTTGTATCGTCTGACACTCGCTGCCACCAATCAGGACACCAGAAAAACAACCACAGTCAACGTAACAGTTATCATATCTGATGTCAATGATAATCCACCGATATTCACCAGCAG

Transcript

OS493_001683-T1

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00028	Cadherin	Cadherin domain	Domain	Interproscan
PF13895	Ig_2	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002126	Domain	Cadherin-like	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR008983	Homologous_superfamily	Tumour necrosis factor-like domain superfamily	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR015919	Homologous_superfamily	Cadherin-like superfamily	Interproscan
IPR020894	Conserved_site	Cadherin conserved site	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR039808	Family	Cadherin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24027	CADHERIN-23	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007155	Biological Process	cell adhesion	Interproscan
GO:0007156	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016342	Cellular Component	catenin complex	Interproscan
GO:0045296	Molecular Function	cadherin binding	Interproscan
GO:0098609	Biological Process	cell-cell adhesion	Interproscan
GO:0098742	Biological Process	cell-cell adhesion via plasma-membrane adhesion molecules	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-

Expression pattern

1. Expression trend for OS493_001683-T1 global RNA-seq network